Gene: Smpd4 ENSMUSG00000005899

Description

sphingomyelin phosphodiesterase 4 [Source:MGI Symbol;Acc:MGI:1924876]

Gene Synonyms

4122402O22Rik, neutral membrane (neutral sphingomyelinase-3)

Location

Chromosome 16: 17,437,218-17,462,692 forward strand.

GRCm39:CM001009.3

About this gene

This gene has 25 transcripts (splice variants), 208 orthologues and is associated with 8 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000006053.13	Smpd4-201	4623	823aa	ENSMUSP00000006053.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28009	Q6ZPR5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000090159.13	Smpd4-202	4565	807aa	ENSMUSP00000087620.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49780	Q6ZPR5-4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000163476.10	Smpd4-203	4532	794aa	ENSMUSP00000131867.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49781	Q6ZPR5-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000165363.10	Smpd4-204	3046	793aa	ENSMUSP00000130720.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49779	Q6ZPR5-3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000231436.2	Smpd4-208	2256	751aa	ENSMUSP00000155897.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P695	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000232021.2	Smpd4-215	2166	721aa	ENSMUSP00000156079.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6S3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000231792.2	Smpd4-212	1722	573aa	ENSMUSP00000156362.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P7L1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000232271.2	Smpd4-220	1672	499aa	ENSMUSP00000156215.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P735	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000231311.2	Smpd4-206	509	128aa	ENSMUSP00000156127.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6U9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000231257.2	Smpd4-205	497	125aa	ENSMUSP00000156136.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6W7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000232442.2	Smpd4-222	472	110aa	ENSMUSP00000155910.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6B0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000232043.2	Smpd4-216	460	82aa	ENSMUSP00000156353.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P7A7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000231887.2	Smpd4-213	270	27aa	ENSMUSP00000155917.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6E2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000231627.2	Smpd4-209	2329	50aa	ENSMUSP00000156051.2	Nonsense mediated decay		A0A338P715	-
ENSMUST00000231722.2	Smpd4-210	2136	55aa	ENSMUSP00000156043.2	Nonsense mediated decay		A0A338P6P4	-
ENSMUST00000232116.2	Smpd4-217	921	92aa	ENSMUSP00000155998.2	Nonsense mediated decay		A0A338P6I0	-
ENSMUST00000232185.2	Smpd4-218	916	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000231736.2	Smpd4-211	516	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000232417.2	Smpd4-221	5017	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000232578.2	Smpd4-225	2915	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000232468.2	Smpd4-223	2446	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000231378.2	Smpd4-207	874	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000232270.2	Smpd4-219	793	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000231949.2	Smpd4-214	626	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000232487.2	Smpd4-224	444	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-