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Description

cold inducible RNA binding protein [Source:HGNC Symbol;Acc:HGNC:1982]

Gene Synonyms

CIRP

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000587896.6CIRBP-2143346297aaENSP00000466025.1
 
Protein coding
CCDS74245D6W5Y5 NM_001300829.2MANE Select v0.95Ensembl CanonicalGENCODE basicTSL:2
ENST00000589710.5CIRBP-2251835297aaENSP00000466897.1
 
Protein coding
CCDS74245D6W5Y5 -GENCODE basicTSL:2
ENST00000588030.5CIRBP-2151509172aaENSP00000468788.1
 
Protein coding
CCDS12059Q14011-1 -GENCODE basicAPPRIS P3TSL:5
ENST00000588090.5CIRBP-2161459172aaENSP00000466207.1
 
Protein coding
CCDS12059Q14011-1 -GENCODE basicAPPRIS P3TSL:3
ENST00000320936.9CIRBP-2011328172aaENSP00000322887.4
 
Protein coding
CCDS12059Q14011-1 -GENCODE basicAPPRIS P3TSL:1
ENST00000586472.5CIRBP-2071303172aaENSP00000465779.1
 
Protein coding
CCDS12059Q14011-1 -GENCODE basicAPPRIS P3TSL:3
ENST00000587323.5CIRBP-2131092297aaENSP00000465077.1
 
Protein coding
CCDS74245D6W5Y5 -GENCODE basicTSL:5
ENST00000589235.5CIRBP-2221073168aaENSP00000467848.1
 
Protein coding
CCDS74244K7EPM4 -GENCODE basicAPPRIS ALT1TSL:2
ENST00000628979.2CIRBP-2461043297aaENSP00000486590.1
 
Protein coding
CCDS74245D6W5Y5 -GENCODE basicTSL:2
ENST00000588230.5CIRBP-2171013297aaENSP00000465558.1
 
Protein coding
CCDS74245D6W5Y5 -GENCODE basicTSL:5
ENST00000586773.5CIRBP-211942168aaENSP00000468645.1
 
Protein coding
CCDS74244K7EPM4 -GENCODE basicAPPRIS ALT1TSL:2
ENST00000585630.5CIRBP-204870172aaENSP00000466110.1
 
Protein coding
CCDS12059Q14011-1 -GENCODE basicAPPRIS P3TSL:3
ENST00000591935.5CIRBP-235746168aaENSP00000467734.1
 
Protein coding
CCDS74244K7EPM4 -GENCODE basicAPPRIS ALT1TSL:3
ENST00000586548.5CIRBP-2081734159aaENSP00000466712.1
 
Protein coding
-K7EMY9 -TSL:3
ENST00000413636.6CIRBP-2021606263aaENSP00000412831.2
 
Protein coding
-Q14011-2 -GENCODE basicTSL:2
ENST00000588411.5CIRBP-219619105aaENSP00000465338.1
 
Protein coding
-K7EJV5 -TSL:5CDS 3' incomplete
ENST00000589266.5CIRBP-22361680aaENSP00000467138.2
 
Protein coding
-K7ENX8 -TSL:3CDS 3' incomplete
ENST00000591659.5CIRBP-234587173aaENSP00000468097.1
 
Protein coding
-K7ER40 -TSL:2CDS 3' incomplete
ENST00000592051.1CIRBP-23657332aaENSP00000468016.1
 
Protein coding
-K7EQX4 -TSL:4CDS 3' incomplete
ENST00000589686.5CIRBP-224532148aaENSP00000465334.2
 
Protein coding
-K7EJV1 -TSL:2CDS 3' incomplete
ENST00000588344.2CIRBP-21837089aaENSP00000466238.2
 
Protein coding
-K7ELV6 -TSL:3CDS 5' incomplete
ENST00000592815.5CIRBP-24033438aaENSP00000467028.2
 
Protein coding
-K7ENN6 -TSL:4CDS 3' incomplete
ENST00000586636.5CIRBP-210938168aaENSP00000464906.1
 
Nonsense mediated decay
CCDS74244K7EPM4 -TSL:2
ENST00000585913.5CIRBP-205833168aaENSP00000467449.1
 
Nonsense mediated decay
CCDS74244K7EPM4 -TSL:3
ENST00000590347.5CIRBP-2283117135aaENSP00000467307.1
 
Nonsense mediated decay
-K7ELT6 -TSL:2
ENST00000587169.5CIRBP-212302879aaENSP00000465114.1
 
Nonsense mediated decay
-K7EQL0 -TSL:2
ENST00000591097.5CIRBP-231150760aaENSP00000468229.1
 
Nonsense mediated decay
-K7EIF7 -TSL:1
ENST00000585914.5CIRBP-2061052202aaENSP00000467948.1
 
Nonsense mediated decay
-K7EQR7 -TSL:5
ENST00000591055.5CIRBP-230928135aaENSP00000466216.1
 
Nonsense mediated decay
-K7ELT6 -TSL:2
ENST00000590171.1CIRBP-22690560aaENSP00000464728.1
 
Nonsense mediated decay
-K7EIF7 -TSL:3
ENST00000591376.5CIRBP-23283079aaENSP00000464830.1
 
Nonsense mediated decay
-K7EQL0 -TSL:3
ENST00000593048.5CIRBP-24165079aaENSP00000467791.1
 
Nonsense mediated decay
-K7EQL0 -TSL:3
ENST00000444172.6CIRBP-20358458aaENSP00000407512.3
 
Nonsense mediated decay
-F6WMK9 -TSL:3CDS 5' incomplete
ENST00000592234.5CIRBP-23757173aaENSP00000466131.2
 
Nonsense mediated decay
-K7ELL4 -TSL:5CDS 5' incomplete
ENST00000592412.5CIRBP-23853279aaENSP00000467876.1
 
Nonsense mediated decay
-K7EQL0 -TSL:4
ENST00000590188.5CIRBP-227361No protein-
 
Processed transcript
---TSL:3
ENST00000593093.5CIRBP-2423528No protein-
 
Retained intron
---TSL:2
ENST00000590704.5CIRBP-2291456No protein-
 
Retained intron
---TSL:2
ENST00000588917.2CIRBP-2201087No protein-
 
Retained intron
---TSL:2
ENST00000621399.1CIRBP-2451044No protein-
 
Retained intron
---TSL:1
ENST00000592467.1CIRBP-239796No protein-
 
Retained intron
---TSL:2
ENST00000593128.5CIRBP-243796No protein-
 
Retained intron
---TSL:3
ENST00000589161.1CIRBP-221769No protein-
 
Retained intron
---TSL:3
ENST00000593283.5CIRBP-244758No protein-
 
Retained intron
---TSL:5
ENST00000586555.2CIRBP-209716No protein-
 
Retained intron
---TSL:2
ENST00000591622.1CIRBP-233548No protein-
 
Retained intron
---TSL:4
Description

sphingomyelin phosphodiesterase 4 [Source:MGI Symbol;Acc:MGI:1924876]

Gene Synonyms

4122402O22Rik, neutral membrane (neutral sphingomyelinase-3)

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000006053.13Smpd4-2014623823aaENSMUSP00000006053.7
 
Protein coding
CCDS28009Q6ZPR5-1 GENCODE basicAPPRIS P1TSL:1
ENSMUST00000090159.13Smpd4-2024565807aaENSMUSP00000087620.5
 
Protein coding
CCDS49780Q6ZPR5-4 GENCODE basicTSL:1
ENSMUST00000163476.10Smpd4-2034532794aaENSMUSP00000131867.2
 
Protein coding
CCDS49781Q6ZPR5-2 GENCODE basicTSL:1
ENSMUST00000165363.10Smpd4-2043046793aaENSMUSP00000130720.2
 
Protein coding
CCDS49779Q6ZPR5-3 GENCODE basicTSL:1
ENSMUST00000231436.2Smpd4-2082256751aaENSMUSP00000155897.2
 
Protein coding
-A0A338P695 GENCODE basic
ENSMUST00000232021.2Smpd4-2152166721aaENSMUSP00000156079.2
 
Protein coding
-A0A338P6S3 GENCODE basic
ENSMUST00000231792.2Smpd4-2121722573aaENSMUSP00000156362.2
 
Protein coding
-A0A338P7L1 GENCODE basic
ENSMUST00000232271.2Smpd4-2201672499aaENSMUSP00000156215.2
 
Protein coding
-A0A338P735 GENCODE basic
ENSMUST00000231311.2Smpd4-206509128aaENSMUSP00000156127.2
 
Protein coding
-A0A338P6U9 CDS 3' incomplete
ENSMUST00000231257.2Smpd4-205497125aaENSMUSP00000156136.2
 
Protein coding
-A0A338P6W7 CDS 3' incomplete
ENSMUST00000232442.2Smpd4-222472110aaENSMUSP00000155910.2
 
Protein coding
-A0A338P6B0 CDS 3' incomplete
ENSMUST00000232043.2Smpd4-21646082aaENSMUSP00000156353.2
 
Protein coding
-A0A338P7A7 CDS 3' incomplete
ENSMUST00000231887.2Smpd4-21327027aaENSMUSP00000155917.2
 
Protein coding
-A0A338P6E2 CDS 3' incomplete
ENSMUST00000231627.2Smpd4-209232950aaENSMUSP00000156051.2
 
Nonsense mediated decay
-A0A338P715 -
ENSMUST00000231722.2Smpd4-210213655aaENSMUSP00000156043.2
 
Nonsense mediated decay
-A0A338P6P4 -
ENSMUST00000232116.2Smpd4-21792192aaENSMUSP00000155998.2
 
Nonsense mediated decay
-A0A338P6I0 -
ENSMUST00000232185.2Smpd4-218916No protein-
 
Processed transcript
---
ENSMUST00000231736.2Smpd4-211516No protein-
 
Processed transcript
---
ENSMUST00000232417.2Smpd4-2215017No protein-
 
Retained intron
---
ENSMUST00000232578.2Smpd4-2252915No protein-
 
Retained intron
---
ENSMUST00000232468.2Smpd4-2232446No protein-
 
Retained intron
---
ENSMUST00000231378.2Smpd4-207874No protein-
 
Retained intron
---
ENSMUST00000232270.2Smpd4-219793No protein-
 
Retained intron
---
ENSMUST00000231949.2Smpd4-214626No protein-
 
Retained intron
---
ENSMUST00000232487.2Smpd4-224444No protein-
 
Retained intron
---
Statistics

Exons: 20, Coding exons: 19, Transcript length: 4,623 bps, Translation length: 823 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS28009

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6ZPR5

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000006053.13

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays

    HASH(0x2810ee20)