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EnsemblEnsembl Home
Description

semaphorin 4D [Source:HGNC Symbol;Acc:HGNC:10732]

Gene Synonyms

C9orf164, CD100, FLJ39737, SEMAJ, coll-4

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000422704.7SEMA4D-2084562862aaENSP00000388768.2
 
Protein coding
CCDS6685Q92854-1 NM_001371194.2MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000450295.5SEMA4D-2125684862aaENSP00000416523.1
 
Protein coding
CCDS6685Q92854-1 -GENCODE basicAPPRIS P1TSL:1
ENST00000438547.6SEMA4D-2114824862aaENSP00000405102.2
 
Protein coding
CCDS6685Q92854-1 -GENCODE basicAPPRIS P1TSL:1
ENST00000356444.6SEMA4D-2024503862aaENSP00000348822.2
 
Protein coding
CCDS6685Q92854-1 -GENCODE basicAPPRIS P1TSL:5
ENST00000420987.5SEMA4D-2074275738aaENSP00000391733.1
 
Protein coding
CCDS47991Q92854-2 -GENCODE basicTSL:5
ENST00000339861.8SEMA4D-2014258738aaENSP00000344923.4
 
Protein coding
CCDS47991Q92854-2 -GENCODE basicTSL:5
ENST00000455551.6SEMA4D-2133594738aaENSP00000411981.2
 
Protein coding
CCDS47991Q92854-2 -GENCODE basicTSL:5
ENST00000420101.6SEMA4D-2041837123aaENSP00000399948.2
 
Protein coding
-A0A0C4DG45 -GENCODE basicTSL:1
ENST00000420681.6SEMA4D-206907146aaENSP00000390754.2
 
Protein coding
-C9JFP1 -TSL:5CDS 3' incomplete
ENST00000540475.5SEMA4D-22382666aaENSP00000438389.1
 
Protein coding
-F5H044 -TSL:3CDS 3' incomplete
ENST00000433650.5SEMA4D-21060275aaENSP00000413352.1
 
Protein coding
-C9JYS7 -TSL:3CDS 3' incomplete
ENST00000418828.1SEMA4D-20356359aaENSP00000416747.1
 
Protein coding
-C9JD54 -TSL:4CDS 3' incomplete
ENST00000420670.5SEMA4D-2054331aaENSP00000405652.1
 
Protein coding
---TSL:3CDS 3' incomplete
ENST00000429836.5SEMA4D-2092895548aaENSP00000395222.1
 
Nonsense mediated decay
-E9PFD9 -TSL:2
ENST00000537934.5SEMA4D-2212710548aaENSP00000446394.1
 
Nonsense mediated decay
-E9PFD9 -TSL:2
ENST00000469653.5SEMA4D-2153533No protein-
 
Processed transcript
---TSL:2
ENST00000475255.5SEMA4D-2173053No protein-
 
Processed transcript
---TSL:1
ENST00000482128.1SEMA4D-218493No protein-
 
Processed transcript
---TSL:3
ENST00000464051.1SEMA4D-214317No protein-
 
Processed transcript
---TSL:2
ENST00000492386.5SEMA4D-2202396No protein-
 
Retained intron
---TSL:2
ENST00000486935.2SEMA4D-219969No protein-
 
Retained intron
---TSL:2
ENST00000544513.1SEMA4D-224599No protein-
 
Retained intron
---TSL:5
ENST00000474258.1SEMA4D-216528No protein-
 
Retained intron
---TSL:4
ENST00000540183.1SEMA4D-222176No protein-
 
Retained intron
---TSL:3
Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 [Source:HGNC Symbol;Acc:HGNC:11106]

Gene Synonyms

BAF60A, CRACD1, Rsc6p

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000394963.9SMARCD1-2023283515aaENSP00000378414.4
 
Protein coding
CCDS8797Q96GM5-1 NM_003076.5MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000381513.8SMARCD1-2013237474aaENSP00000370924.4
 
Protein coding
CCDS8798Q96GM5-2 -GENCODE basicTSL:1
ENST00000548573.5SMARCD1-2052095313aaENSP00000448627.1
 
Protein coding
-F8VRQ4 -GENCODE basicTSL:5
ENST00000550477.5SMARCD1-209911289aaENSP00000448030.1
 
Protein coding
-F8VUB0 -TSL:3CDS 3' incomplete
ENST00000551966.5SMARCD1-212881278aaENSP00000447386.1
 
Protein coding
-F8VZ70 -TSL:5CDS 3' incomplete
ENST00000551497.1SMARCD1-211536113aaENSP00000449825.1
 
Protein coding
-F8VW95 -TSL:4CDS 3' incomplete
ENST00000549274.1SMARCD1-206611115aaENSP00000447909.1
 
Nonsense mediated decay
-H0YHV1 -TSL:3CDS 5' incomplete
ENST00000549526.1SMARCD1-207401No protein-
 
Processed transcript
---TSL:5
ENST00000547247.5SMARCD1-2031584No protein-
 
Retained intron
---TSL:1
ENST00000551352.1SMARCD1-210621No protein-
 
Retained intron
---TSL:2
ENST00000547637.1SMARCD1-204587No protein-
 
Retained intron
---TSL:2
ENST00000550280.1SMARCD1-208567No protein-
 
Retained intron
---TSL:2
Description

solute carrier family 6 member 15 [Source:HGNC Symbol;Acc:HGNC:13621]

Gene Synonyms

FLJ10316, NTT73, SBAT1, V7-3, hv7-3

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000266682.10SLC6A15-2014799730aaENSP00000266682.5
 
Protein coding
CCDS9026Q9H2J7-1 NM_182767.6MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000681688.1SLC6A15-2424993289aaENSP00000505731.1
 
Protein coding
CCDS9027--GENCODE basic
ENST00000681106.1SLC6A15-2354821730aaENSP00000505789.1
 
Protein coding
CCDS9026--GENCODE basicAPPRIS P1
ENST00000681721.1SLC6A15-2434821730aaENSP00000505286.1
 
Protein coding
CCDS9026--GENCODE basicAPPRIS P1
ENST00000680963.1SLC6A15-2344725730aaENSP00000505485.1
 
Protein coding
CCDS9026--GENCODE basicAPPRIS P1
ENST00000450363.4SLC6A15-2034312289aaENSP00000390706.2
 
Protein coding
CCDS9027Q9H2J7-2 -GENCODE basicTSL:1
ENST00000552192.5SLC6A15-2112221623aaENSP00000450145.1
 
Protein coding
CCDS53816Q9H2J7-3 -GENCODE basicTSL:2
ENST00000680714.1SLC6A15-2304658144aaENSP00000505814.1
 
Protein coding
---GENCODE basic
ENST00000680469.1SLC6A15-2284524635aaENSP00000505775.1
 
Protein coding
---GENCODE basic
ENST00000681281.1SLC6A15-2374098202aaENSP00000506053.1
 
Protein coding
---GENCODE basic
ENST00000679453.1SLC6A15-2154091275aaENSP00000506425.1
 
Protein coding
---GENCODE basic
ENST00000680892.1SLC6A15-2323835446aaENSP00000506546.1
 
Protein coding
---GENCODE basic
ENST00000309283.12SLC6A15-2023106319aaENSP00000311645.8
 
Protein coding
-F8WJN6 -TSL:5CDS 5' incomplete
ENST00000680379.1SLC6A15-2272876692aaENSP00000506716.1
 
Protein coding
---GENCODE basic
ENST00000680260.1SLC6A15-22677496aaENSP00000505247.1
 
Protein coding
---CDS 3' incomplete
ENST00000679933.1SLC6A15-22072696aaENSP00000505705.1
 
Protein coding
---CDS 3' incomplete
ENST00000551010.2SLC6A15-20765096aaENSP00000475035.2
 
Protein coding
-S4R439 -TSL:4CDS 3' incomplete
ENST00000549540.1SLC6A15-20656396aaENSP00000448308.1
 
Protein coding
-F8VSG1 -TSL:4CDS 3' incomplete
ENST00000679989.1SLC6A15-2225700554aaENSP00000505134.1
 
Nonsense mediated decay
----
ENST00000679430.1SLC6A15-2145477376aaENSP00000505934.1
 
Nonsense mediated decay
----
ENST00000681220.1SLC6A15-2364927555aaENSP00000505062.1
 
Nonsense mediated decay
----
ENST00000680187.1SLC6A15-2244863341aaENSP00000506491.1
 
Nonsense mediated decay
----
ENST00000680780.1SLC6A15-2314598376aaENSP00000506131.1
 
Nonsense mediated decay
----
ENST00000680207.1SLC6A15-2253909102aaENSP00000506161.1
 
Nonsense mediated decay
----
ENST00000679679.1SLC6A15-217696120aaENSP00000505628.1
 
Nonsense mediated decay
---CDS 5' incomplete
ENST00000679363.1SLC6A15-21268661aaENSP00000504902.1
 
Nonsense mediated decay
---CDS 5' incomplete
ENST00000679681.1SLC6A15-21847553aaENSP00000506482.1
 
Nonsense mediated decay
---CDS 5' incomplete
ENST00000551388.1SLC6A15-208592No protein-
 
Processed transcript
---TSL:5
ENST00000551818.1SLC6A15-210587No protein-
 
Processed transcript
---TSL:4
ENST00000547240.1SLC6A15-204545No protein-
 
Processed transcript
---TSL:4
ENST00000681453.1SLC6A15-239272No protein-
 
Processed transcript
----
ENST00000681582.1SLC6A15-240214No protein-
 
Processed transcript
----
ENST00000551612.6SLC6A15-209213No protein-
 
Processed transcript
---TSL:3
ENST00000680901.1SLC6A15-233212No protein-
 
Processed transcript
----
ENST00000681418.1SLC6A15-2386442No protein-
 
Retained intron
----
ENST00000681953.1SLC6A15-2455962No protein-
 
Retained intron
----
ENST00000679920.1SLC6A15-2195105No protein-
 
Retained intron
----
ENST00000548267.2SLC6A15-2054907No protein-
 
Retained intron
---TSL:2
ENST00000679956.1SLC6A15-2214810No protein-
 
Retained intron
----
ENST00000679414.1SLC6A15-2134192No protein-
 
Retained intron
----
ENST00000680067.1SLC6A15-2233307No protein-
 
Retained intron
----
ENST00000681939.1SLC6A15-2442915No protein-
 
Retained intron
----
ENST00000680676.1SLC6A15-2292033No protein-
 
Retained intron
----
ENST00000681628.1SLC6A15-2411831No protein-
 
Retained intron
----
ENST00000679652.1SLC6A15-2161554No protein-
 
Retained intron
----
Description

RAP2C, member of RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:21165]

Gene Synonyms

DKFZp313B211

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000370874.2RAP2C-2023972183aaENSP00000359911.1
 
Protein coding
CCDS14632Q9Y3L5 NM_001271186.2MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P1TSL:2
ENST00000342983.6RAP2C-2013896183aaENSP00000340274.2
 
Protein coding
CCDS14632Q9Y3L5 -GENCODE basicAPPRIS P1TSL:1
ENST00000620646.4RAP2C-2053341117aaENSP00000484870.1
 
Protein coding
CCDS76024A0A087X2C3 -GENCODE basicTSL:5
ENST00000460462.1RAP2C-203804No protein-
 
Processed transcript
---TSL:3
ENST00000490400.1RAP2C-204215No protein-
 
Processed transcript
---TSL:2
Description

myosin heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:7573]

Gene Synonyms

HEMHC, MYHC-EMB, MYHSE1, SMHCE

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000583535.6MYH3-20560321940aaENSP00000464317.1
 
Protein coding
CCDS11157P11055 NM_002470.4MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P1TSL:5
ENST00000579489.2MYH3-202609No protein-
 
Retained intron
---TSL:5
ENST00000582580.1MYH3-204583No protein-
 
Retained intron
---TSL:5
ENST00000577963.1MYH3-201486No protein-
 
Retained intron
---TSL:2
ENST00000579928.2MYH3-203480No protein-
 
Retained intron
---TSL:2
Description

prefoldin subunit 5 [Source:HGNC Symbol;Acc:HGNC:8869]

Gene Synonyms

MM-1, PFD5

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000334478.9PFDN5-202596154aaENSP00000334188.4
 
Protein coding
CCDS8853Q99471-1 NM_002624.4MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P2TSL:1
ENST00000551018.5PFDN5-214847154aaENSP00000447942.1
 
Protein coding
CCDS8853Q99471-1 -GENCODE basicAPPRIS P2TSL:1
ENST00000351500.7PFDN5-203478109aaENSP00000266964.4
 
Protein coding
CCDS8854Q99471-3 -GENCODE basicTSL:1
ENST00000549759.2PFDN5-207635156aaENSP00000455296.2
 
Protein coding
-H3BPF6 -GENCODE basicAPPRIS ALT1TSL:3
ENST00000552742.6PFDN5-21857141aaENSP00000450380.2
 
Protein coding
-F8VNW6 -GENCODE basicTSL:3
ENST00000547130.6PFDN5-20455985aaENSP00000449388.2
 
Protein coding
-A0A0D9SFR8 -GENCODE basicTSL:2
ENST00000628881.2PFDN5-22052885aaENSP00000486843.2
 
Protein coding
-A0A0D9SFR8 -GENCODE basicTSL:3
ENST00000550846.5PFDN5-21139284aaENSP00000454489.1
 
Protein coding
-H3BMQ1 -GENCODE basicTSL:2
ENST00000676468.1PFDN5-22164085aaENSP00000504615.1
 
Nonsense mediated decay
-A0A7I2V5H9 --
ENST00000550880.5PFDN5-21259537aaENSP00000450068.1
 
Nonsense mediated decay
-F8VQZ2 -TSL:2
ENST00000243040.10PFDN5-20156466aaENSP00000243040.6
 
Nonsense mediated decay
-Q99471-2 -TSL:1
ENST00000678256.1PFDN5-2262565No protein-
 
Retained intron
----
ENST00000677712.1PFDN5-2252441No protein-
 
Retained intron
----
ENST00000552341.5PFDN5-2161980No protein-
 
Retained intron
---TSL:2
ENST00000678284.1PFDN5-2271786No protein-
 
Retained intron
----
ENST00000677199.1PFDN5-2231767No protein-
 
Retained intron
----
ENST00000677184.1PFDN5-2221538No protein-
 
Retained intron
----
ENST00000550964.6PFDN5-2131199No protein-
 
Retained intron
---TSL:2
ENST00000552548.6PFDN5-217948No protein-
 
Retained intron
---TSL:2
ENST00000550069.2PFDN5-209946No protein-
 
Retained intron
---TSL:2
ENST00000550513.1PFDN5-210939No protein-
 
Retained intron
---TSL:3
ENST00000553171.2PFDN5-219904No protein-
 
Retained intron
---TSL:1
ENST00000547228.1PFDN5-205726No protein-
 
Retained intron
---TSL:5
ENST00000677326.1PFDN5-224631No protein-
 
Retained intron
----
ENST00000549995.1PFDN5-208598No protein-
 
Retained intron
---TSL:3
ENST00000548984.1PFDN5-206541No protein-
 
Retained intron
---TSL:2
ENST00000551223.5PFDN5-215478No protein-
 
Retained intron
---TSL:4
Description

potassium calcium-activated channel subfamily N member 3 [Source:HGNC Symbol;Acc:HGNC:6292]

Gene Synonyms

KCa2.3, SKCA3, hSK3

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000271915.9KCNN3-20113034731aaENSP00000271915.3
 
Protein coding
CCDS30880Q9UGI6-1 NM_002249.6MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P3TSL:1
ENST00000618040.4KCNN3-20513057746aaENSP00000481848.1
 
Protein coding
CCDS72928A0A087WYJ0 -GENCODE basicAPPRIS ALT2TSL:5
ENST00000361147.8KCNN3-2031962426aaENSP00000354764.4
 
Protein coding
CCDS1072Q9UGI6-2 -GENCODE basicTSL:1
ENST00000358505.2KCNN3-2021658418aaENSP00000351295.2
 
Protein coding
-Q9UGI6-3 -GENCODE basicTSL:1
ENST00000515643.1KCNN3-204532No protein-
 
Processed transcript
---TSL:3
Description

protein tyrosine phosphatase receptor type C [Source:HGNC Symbol;Acc:HGNC:9666]

Gene Synonyms

CD45, GP180, LCA, T200

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000442510.8PTPRC-20953571306aaENSP00000411355.3
 
Protein coding
CCDS1397P08575-3 NM_002838.5MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P4TSL:1
ENST00000348564.11PTPRC-20147531145aaENSP00000306782.7
 
Protein coding
CCDS1398P08575-4 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000413409.6PTPRC-206133887aaENSP00000405494.3
 
Protein coding
CCDS44291M9MML4 -GENCODE basicTSL:1
ENST00000367367.8PTPRC-2032291735aaENSP00000356337.5
 
Protein coding
-M3ZCP1 -TSL:2CDS 3' incomplete
ENST00000530727.5PTPRC-2141962600aaENSP00000433536.2
 
Protein coding
-E9PKH0 -TSL:1CDS 3' incomplete
ENST00000367364.5PTPRC-202101736aaENSP00000356334.2
 
Protein coding
-M9MMK8 -GENCODE basicTSL:1
ENST00000367379.6PTPRC-204731148aaENSP00000356349.2
 
Protein coding
-M9MMK9 -TSL:5CDS 3' incomplete
ENST00000643513.1PTPRC-215592161aaENSP00000494132.1
 
Protein coding
-A0A2R8YE81 -CDS 3' incomplete
ENST00000645247.1PTPRC-216588151aaENSP00000494327.1
 
Protein coding
-A0A2R8Y5B1 -CDS 3' incomplete
ENST00000418674.1PTPRC-207462118aaENSP00000393360.2
 
Protein coding
-M9MML3 -TSL:2CDS 3' incomplete
ENST00000529828.5PTPRC-2132336753aaENSP00000469141.1
 
Non stop decay
-A0A075B788 -TSL:1
ENST00000391970.3PTPRC-205408No protein-
 
Processed transcript
---TSL:1
ENST00000427110.6PTPRC-208264No protein-
 
Processed transcript
---TSL:1
ENST00000462363.6PTPRC-210926No protein-
 
Retained intron
---TSL:1
ENST00000491302.1PTPRC-212648No protein-
 
Retained intron
---TSL:2
ENST00000484135.1PTPRC-211612No protein-
 
Retained intron
---TSL:5
ENST00000646230.1PTPRC-217607No protein-
 
Retained intron
----
Description

NADH:ubiquinone oxidoreductase core subunit S1 [Source:MGI Symbol;Acc:MGI:2443241]

Gene Synonyms

5830412M15Rik, 9930026A05Rik

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000027111.15Ndufs1-2012661727aaENSMUSP00000027111.9
 
Protein coding
CCDS14996Q91VD9 GENCODE basicAPPRIS P1TSL:1
ENSMUST00000168099.9Ndufs1-2032590727aaENSMUSP00000126621.3
 
Protein coding
CCDS14996Q91VD9 GENCODE basicAPPRIS P1TSL:1
ENSMUST00000185847.2Ndufs1-20765561aaENSMUSP00000141190.2
 
Protein coding
-A0A087WSU3 TSL:5CDS 3' incomplete
ENSMUST00000185732.7Ndufs1-205651118aaENSMUSP00000140307.2
 
Protein coding
-A0A087WQR0 TSL:5CDS 3' incomplete
ENSMUST00000188370.7Ndufs1-211516135aaENSMUSP00000139664.2
 
Protein coding
-A0A087WP77 TSL:5CDS 3' incomplete
ENSMUST00000185412.7Ndufs1-20436879aaENSMUSP00000140467.2
 
Protein coding
-A0A087WR47 TSL:5CDS 3' incomplete
ENSMUST00000189664.2Ndufs1-21233219aaENSMUSP00000140819.2
 
Protein coding
-A0A087WRY4 TSL:3CDS 3' incomplete
ENSMUST00000187756.7Ndufs1-20949362aaENSMUSP00000140072.2
 
Nonsense mediated decay
-A0A087WQ77 TSL:3CDS 5' incomplete
ENSMUST00000186569.2Ndufs1-2082610No protein-
 
Retained intron
--TSL:NA
ENSMUST00000140612.2Ndufs1-2021922No protein-
 
Retained intron
--TSL:1
ENSMUST00000185827.7Ndufs1-2061775No protein-
 
Retained intron
--TSL:1
ENSMUST00000190095.2Ndufs1-2131366No protein-
 
Retained intron
--TSL:NA
ENSMUST00000187835.2Ndufs1-210826No protein-
 
Retained intron
--TSL:2
Description

long intergenic non-protein coding RNA 511 [Source:HGNC Symbol;Acc:HGNC:43564]

Gene Synonyms

onco-lncRNA-12

Location
Gene
Transcript IDNamebpProteinTranslation IDBiotypeCCDSRefSeq MatchFlags
ENST00000650033.1LINC00511-2793766No protein-
 
Retained intron
---
ENST00000650016.1LINC00511-278508No protein-
 
Retained intron
---
ENST00000648631.1LINC00511-2442929No protein-
 
lncRNA
--Ensembl CanonicalGENCODE basic
ENST00000647652.1LINC00511-2203700No protein-
 
lncRNA
--GENCODE basic
ENST00000582712.2LINC00511-2152586No protein-
 
lncRNA
--GENCODE basicTSL:3
ENST00000647706.2LINC00511-2212532No protein-
 
lncRNA
---
ENST00000649350.1LINC00511-2612527No protein-
 
lncRNA
---
ENST00000648623.2LINC00511-2432522No protein-
 
lncRNA
---
ENST00000650131.3LINC00511-2832292No protein-
 
lncRNA
--GENCODE basic
ENST00000647953.1LINC00511-2252292No protein-
 
lncRNA
--GENCODE basic
ENST00000581549.2LINC00511-2132266No protein-
 
lncRNA
--GENCODE basicTSL:2
ENST00000648401.1LINC00511-2352214No protein-
 
lncRNA
--GENCODE basic
ENST00000649793.2LINC00511-2742208No protein-
 
lncRNA
---
ENST00000650051.1LINC00511-2802207No protein-
 
lncRNA
---
ENST00000650212.1LINC00511-2892174No protein-
 
lncRNA
--GENCODE basic
ENST00000649881.1LINC00511-2762078No protein-
 
lncRNA
---
ENST00000650371.1LINC00511-2942061No protein-
 
lncRNA
---
ENST00000649647.1LINC00511-2722060No protein-
 
lncRNA
---
ENST00000650550.2LINC00511-3022041No protein-
 
lncRNA
--GENCODE basic
ENST00000649366.1LINC00511-2622028No protein-
 
lncRNA
---
ENST00000650313.1LINC00511-2921995No protein-
 
lncRNA
--GENCODE basic
ENST00000649250.1LINC00511-2551978No protein-
 
lncRNA
---
ENST00000647871.2LINC00511-2241958No protein-
 
lncRNA
--GENCODE basic
ENST00000649074.1LINC00511-2521905No protein-
 
lncRNA
--GENCODE basic
ENST00000648952.1LINC00511-2491893No protein-
 
lncRNA
---
ENST00000650483.1LINC00511-2991888No protein-
 
lncRNA
---
ENST00000648520.1LINC00511-2401888No protein-
 
lncRNA
--GENCODE basic
ENST00000648411.1LINC00511-2371843No protein-
 
lncRNA
--GENCODE basic
ENST00000649433.1LINC00511-2641836No protein-
 
lncRNA
--GENCODE basic
ENST00000648297.1LINC00511-2341823No protein-
 
lncRNA
---
ENST00000649311.1LINC00511-2571815No protein-
 
lncRNA
---
ENST00000649172.1LINC00511-2531788No protein-
 
lncRNA
---
ENST00000583460.2LINC00511-2161778No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000649833.1LINC00511-2751772No protein-
 
lncRNA
---
ENST00000648667.1LINC00511-2451751No protein-
 
lncRNA
--GENCODE basic
ENST00000649733.1LINC00511-2731742No protein-
 
lncRNA
---
ENST00000578206.2LINC00511-2051732No protein-
 
lncRNA
--TSL:3
ENST00000453722.6LINC00511-2011716No protein-
 
lncRNA
--TSL:2
ENST00000648069.1LINC00511-2271713No protein-
 
lncRNA
---
ENST00000647593.1LINC00511-2181690No protein-
 
lncRNA
---
ENST00000649489.1LINC00511-2661682No protein-
 
lncRNA
---
ENST00000648176.2LINC00511-2301647No protein-
 
lncRNA
---
ENST00000457958.7LINC00511-2021626No protein-
 
lncRNA
--TSL:1
ENST00000648403.1LINC00511-2361556No protein-
 
lncRNA
--GENCODE basic
ENST00000649343.1LINC00511-2601552No protein-
 
lncRNA
---
ENST00000650602.2LINC00511-3061510No protein-
 
lncRNA
--GENCODE basic
ENST00000648248.1LINC00511-2331468No protein-
 
lncRNA
---
ENST00000650423.1LINC00511-2961455No protein-
 
lncRNA
---
ENST00000648522.1LINC00511-2411351No protein-
 
lncRNA
---
ENST00000650083.1LINC00511-2811329No protein-
 
lncRNA
---
ENST00000648104.2LINC00511-2291264No protein-
 
lncRNA
---
ENST00000649597.1LINC00511-2701206No protein-
 
lncRNA
---
ENST00000650482.1LINC00511-2981202No protein-
 
lncRNA
---
ENST00000649440.2LINC00511-2651159No protein-
 
lncRNA
---
ENST00000650227.1LINC00511-2901126No protein-
 
lncRNA
---
ENST00000649614.1LINC00511-2711098No protein-
 
lncRNA
---
ENST00000649532.1LINC00511-2671045No protein-
 
lncRNA
---
ENST00000649407.1LINC00511-2631045No protein-
 
lncRNA
---
ENST00000648054.1LINC00511-2261027No protein-
 
lncRNA
---
ENST00000650211.1LINC00511-288977No protein-
 
lncRNA
---
ENST00000650419.2LINC00511-295952No protein-
 
lncRNA
---
ENST00000650191.1LINC00511-286951No protein-
 
lncRNA
---
ENST00000649197.1LINC00511-254937No protein-
 
lncRNA
--GENCODE basic
ENST00000577773.3LINC00511-203880No protein-
 
lncRNA
--GENCODE basicTSL:3
ENST00000650289.2LINC00511-291862No protein-
 
lncRNA
---
ENST00000581183.3LINC00511-212860No protein-
 
lncRNA
--TSL:3
ENST00000581801.7LINC00511-214855No protein-
 
lncRNA
--TSL:3
ENST00000648672.2LINC00511-246841No protein-
 
lncRNA
---
ENST00000650476.1LINC00511-297826No protein-
 
lncRNA
---
ENST00000649553.1LINC00511-268819No protein-
 
lncRNA
---
ENST00000649936.1LINC00511-277796No protein-
 
lncRNA
---
ENST00000650161.1LINC00511-284791No protein-
 
lncRNA
---
ENST00000649269.1LINC00511-256789No protein-
 
lncRNA
---
ENST00000648428.1LINC00511-238780No protein-
 
lncRNA
---
ENST00000647611.1LINC00511-219762No protein-
 
lncRNA
---
ENST00000650194.2LINC00511-287762No protein-
 
lncRNA
---
ENST00000648203.1LINC00511-231746No protein-
 
lncRNA
---
ENST00000648907.1LINC00511-248736No protein-
 
lncRNA
---
ENST00000580861.2LINC00511-210701No protein-
 
lncRNA
--GENCODE basicTSL:4
ENST00000650510.1LINC00511-301692No protein-
 
lncRNA
---
ENST00000650180.1LINC00511-285691No protein-
 
lncRNA
---
ENST00000648954.1LINC00511-250689No protein-
 
lncRNA
---
ENST00000580199.7LINC00511-208678No protein-
 
lncRNA
--TSL:3
ENST00000648088.1LINC00511-228669No protein-
 
lncRNA
---
ENST00000648220.1LINC00511-232668No protein-
 
lncRNA
---
ENST00000577828.6LINC00511-204656No protein-
 
lncRNA
--TSL:3
ENST00000650570.1LINC00511-304617No protein-
 
lncRNA
---
ENST00000580500.5LINC00511-209561No protein-
 
lncRNA
--TSL:4
ENST00000650554.1LINC00511-303514No protein-
 
lncRNA
---
ENST00000649332.1LINC00511-259509No protein-
 
lncRNA
---
ENST00000648840.1LINC00511-247502No protein-
 
lncRNA
---
ENST00000647735.1LINC00511-222496No protein-
 
lncRNA
--GENCODE basic
ENST00000580948.1LINC00511-211475No protein-
 
lncRNA
--TSL:3
ENST00000649595.2LINC00511-269471No protein-
 
lncRNA
---
ENST00000579631.2LINC00511-206448No protein-
 
lncRNA
--TSL:2
ENST00000650357.1LINC00511-293325No protein-
 
lncRNA
---
ENST00000649013.1LINC00511-251266No protein-
 
lncRNA
---
ENST00000648559.1LINC00511-242261No protein-
 
lncRNA
---
ENST00000650499.1LINC00511-300231No protein-
 
lncRNA
---
ENST00000649330.1LINC00511-258230No protein-
 
lncRNA
---
ENST00000648500.1LINC00511-239219No protein-
 
lncRNA
---
ENST00000580175.2LINC00511-207208No protein-
 
lncRNA
--TSL:3
ENST00000584749.2LINC00511-217173No protein-
 
lncRNA
--TSL:3
ENST00000650600.1LINC00511-305117No protein-
 
lncRNA
---
ENST00000647850.1LINC00511-223111No protein-
 
lncRNA
---
ENST00000650121.1LINC00511-282108No protein-
 
lncRNA
---
Description

calpain 3 [Source:HGNC Symbol;Acc:HGNC:1480]

Gene Synonyms

CANP3, LGMD2, LGMD2A, nCL-1, p94

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000397163.8CAPN3-2063315821aaENSP00000380349.3
 
Protein coding
CCDS45245P20807-1 NM_000070.3MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000674139.1CAPN3-2564597156aaENSP00000501054.1
 
Protein coding
CCDS10086P20807-5 -GENCODE basic
ENST00000357568.8CAPN3-2053130815aaENSP00000350181.3
 
Protein coding
CCDS32207P20807-3 -GENCODE basicTSL:1
ENST00000349748.8CAPN3-2033045729aaENSP00000183936.4
 
Protein coding
CCDS10085P20807-2 -GENCODE basicTSL:1
ENST00000673886.1CAPN3-2362078156aaENSP00000501155.1
 
Protein coding
CCDS10086P20807-5 -GENCODE basic
ENST00000674093.1CAPN3-2521984156aaENSP00000501303.1
 
Protein coding
CCDS10086P20807-5 -GENCODE basic
ENST00000674146.1CAPN3-2581733156aaENSP00000501175.1
 
Protein coding
CCDS10086P20807-5 -GENCODE basic
ENST00000674149.1CAPN3-2591707156aaENSP00000501112.1
 
Protein coding
CCDS10086P20807-5 -GENCODE basic
ENST00000674018.1CAPN3-2471691156aaENSP00000501271.1
 
Protein coding
CCDS10086P20807-5 -GENCODE basic
ENST00000673851.1CAPN3-2341688156aaENSP00000501142.1
 
Protein coding
CCDS10086P20807-5 -GENCODE basic
ENST00000397200.8CAPN3-2071643309aaENSP00000380384.4
 
Protein coding
CCDS45246P20807-4 -GENCODE basicTSL:1
ENST00000673928.1CAPN3-2391437156aaENSP00000501099.1
 
Protein coding
CCDS10086P20807-5 -GENCODE basic
ENST00000673771.1CAPN3-2301418156aaENSP00000501023.1
 
Protein coding
CCDS10086P20807-5 -GENCODE basic
ENST00000673890.1CAPN3-2371416156aaENSP00000501293.1
 
Protein coding
CCDS10086P20807-5 -GENCODE basic
ENST00000673936.1CAPN3-2401317156aaENSP00000501189.1
 
Protein coding
CCDS10086P20807-5 -GENCODE basic
ENST00000337571.9CAPN3-2021304156aaENSP00000336840.4
 
Protein coding
CCDS10086P20807-5 -GENCODE basicTSL:1
ENST00000356316.7CAPN3-2041291156aaENSP00000348667.4
 
Protein coding
CCDS10086P20807-5 -GENCODE basicTSL:5
ENST00000397204.9CAPN3-2081263156aaENSP00000380387.4
 
Protein coding
CCDS10086P20807-5 -GENCODE basicTSL:1
ENST00000674119.1CAPN3-2531170156aaENSP00000501217.1
 
Protein coding
CCDS10086P20807-5 -GENCODE basic
ENST00000569136.6CAPN3-2191148156aaENSP00000455254.1
 
Protein coding
CCDS10086P20807-5 -GENCODE basicTSL:2
ENST00000673692.1CAPN3-226861156aaENSP00000501138.1
 
Protein coding
CCDS10086P20807-5 -GENCODE basic
ENST00000673750.1CAPN3-2294195191aaENSP00000501173.1
 
Protein coding
-H3BS77 -GENCODE basic
ENST00000318023.11CAPN3-2013172773aaENSP00000326281.8
 
Protein coding
-F8W8F5 -GENCODE basicTSL:5
ENST00000674052.1CAPN3-2502354229aaENSP00000501057.1
 
Protein coding
-A0A669KB08 -GENCODE basic
ENST00000673978.1CAPN3-2431623202aaENSP00000500976.1
 
Protein coding
-A0A669KAB9 -GENCODE basic
ENST00000673743.1CAPN3-2281526122aaENSP00000500989.1
 
Protein coding
-A0A669KAX6 -GENCODE basic
ENST00000561817.5CAPN3-210915191aaENSP00000456575.1
 
Protein coding
-H3BS77 -GENCODE basicTSL:1
ENST00000569827.5CAPN3-220908255aaENSP00000454379.1
 
Protein coding
-H3BMH1 -TSL:5CDS 3' incomplete
ENST00000673839.1CAPN3-233897144aaENSP00000501188.1
 
Protein coding
-A0A669KB98 -CDS 3' incomplete
ENST00000674135.1CAPN3-255801201aaENSP00000501178.1
 
Protein coding
-A0A669KBA3 -CDS 3' incomplete
ENST00000674041.1CAPN3-249725184aaENSP00000500956.1
 
Protein coding
-A0A669KAU6 -CDS 3' incomplete
ENST00000565559.5CAPN3-215711157aaENSP00000457878.1
 
Protein coding
-H3BUZ3 -TSL:3CDS 3' incomplete
ENST00000564503.5CAPN3-212593169aaENSP00000457898.1
 
Protein coding
-H3BV08 -TSL:5CDS 5' incomplete
ENST00000567071.5CAPN3-216563188aaENSP00000456607.1
 
Protein coding
-H3BSA2 -TSL:4CDS 5' and 3' incomplete
ENST00000673705.1CAPN3-227223984aaENSP00000501021.1
 
Nonsense mediated decay
-A0A669KB02 -CDS 5' incomplete
ENST00000673987.1CAPN3-244135099aaENSP00000501231.1
 
Nonsense mediated decay
-A0A669KBE1 --
ENST00000674011.1CAPN3-245134899aaENSP00000501171.1
 
Nonsense mediated decay
-A0A669KBE1 --
ENST00000673939.1CAPN3-241128899aaENSP00000501129.1
 
Nonsense mediated decay
-A0A669KBE1 --
ENST00000673646.1CAPN3-222102783aaENSP00000501007.1
 
Nonsense mediated decay
-A0A0S2Z3E6 --
ENST00000568153.2CAPN3-218769110aaENSP00000454937.2
 
Nonsense mediated decay
-H3BNN7 -TSL:5CDS 5' incomplete
ENST00000565274.5CAPN3-214734110aaENSP00000457759.1
 
Nonsense mediated decay
-H3BUR3 -TSL:5CDS 5' incomplete
ENST00000567817.6CAPN3-21771884aaENSP00000456514.2
 
Nonsense mediated decay
-H3BS30 -TSL:5CDS 5' incomplete
ENST00000562199.2CAPN3-211469109aaENSP00000501034.1
 
Nonsense mediated decay
-A0A669KB11 -TSL:5CDS 5' incomplete
ENST00000673893.1CAPN3-23841143aaENSP00000500987.1
 
Nonsense mediated decay
-A0A669KAU4 -CDS 5' incomplete
ENST00000638141.2CAPN3-2212745No protein-
 
Processed transcript
---TSL:5
ENST00000674140.1CAPN3-2571577No protein-
 
Processed transcript
----
ENST00000673658.1CAPN3-2231166No protein-
 
Processed transcript
----
ENST00000673950.1CAPN3-242913No protein-
 
Processed transcript
----
ENST00000565173.2CAPN3-213879No protein-
 
Processed transcript
---TSL:4
ENST00000674012.1CAPN3-246796No protein-
 
Processed transcript
----
ENST00000674064.1CAPN3-251794No protein-
 
Processed transcript
----
ENST00000673854.1CAPN3-2356433No protein-
 
Retained intron
----
ENST00000673774.1CAPN3-2311724No protein-
 
Retained intron
----
ENST00000466222.7CAPN3-2091366No protein-
 
Retained intron
---TSL:2
ENST00000673813.1CAPN3-2321102No protein-
 
Retained intron
----
ENST00000673687.1CAPN3-2251071No protein-
 
Retained intron
----
ENST00000674027.1CAPN3-248799No protein-
 
Retained intron
----
ENST00000674130.1CAPN3-254705No protein-
 
Retained intron
----
ENST00000673684.1CAPN3-224521No protein-
 
Retained intron
----
Statistics

Exons: 7, Coding exons: 3, Transcript length: 2,239 bps, Translation length: 84 residues

Incomplete CDS

CDS 5' incomplete

Version

ENST00000673705.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript-based displays

    HASH(0x39266788)