Human (GRCh38.p14)
Description

sodium voltage-gated channel alpha subunit 1 [Source:HGNC Symbol;Acc:HGNC:10585]

Gene Synonyms

FEB3, GEFSP2, HBSCI, NAC1, NAV1.1, SCN1, SMEI

About this transcript

This transcript has 3 exons, is associated with 22632 variant alleles and maps to 94 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000674923.1SCN1A-224119402009aaENSP00000501589.1
 
Protein coding
CCDS54413P35498-1 NM_001165963.4MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P4
ENST00000641575.1SCN1A-218128741997aaENSP00000492917.1
 
Protein coding
CCDS86891A0A286YF26 -GENCODE basicAPPRIS ALT1
ENST00000641603.1SCN1A-219125061915aaENSP00000492945.1
 
Protein coding
A0A286YEQ8 -GENCODE basic
ENST00000303395.9SCN1A-201118532009aaENSP00000303540.4
 
Protein coding
CCDS54413P35498-1 -GENCODE basicAPPRIS P4TSL:5
ENST00000635776.1SCN1A-209101071618aaENSP00000490692.1
 
Protein coding
A0A1B0GVX7 -GENCODE basicTSL:5
ENST00000637988.1SCN1A-21685621998aaENSP00000490780.1
 
Protein coding
CCDS33316P35498-2 -GENCODE basicAPPRIS ALT1TSL:5
ENST00000635750.1SCN1A-20882991998aaENSP00000490799.1
 
Protein coding
CCDS33316P35498-2 -GENCODE basicAPPRIS ALT1TSL:5
ENST00000640036.1SCN1A-21781311998aaENSP00000491573.1
 
Protein coding
A0A1W2PPJ3 -GENCODE basicTSL:5
ENST00000375405.7SCN1A-20280971998aaENSP00000364554.3
 
Protein coding
CCDS33316P35498-2 -GENCODE basicAPPRIS ALT1TSL:5
ENST00000409050.1SCN1A-20359461981aaENSP00000386312.1
 
Protein coding
CCDS54414P35498-3 -GENCODE basicTSL:5
ENST00000637285.2SCN1A-2141333aaENSP00000490612.1
 
Protein coding
--TSL:5CDS 3' incomplete
ENST00000641996.1SCN1A-22012903149aaENSP00000493054.1
 
Nonsense mediated decay
A0A286YFA8 --
ENST00000636194.1SCN1A-2118508829aaENSP00000490288.1
 
Nonsense mediated decay
A0A1B0GUX7 -TSL:5
ENST00000671940.1SCN1A-2228315629aaENSP00000500336.1
 
Nonsense mediated decay
A0A5F9ZHI6 --
ENST00000689288.1SCN1A-2258258685aaENSP00000509637.1
 
Nonsense mediated decay
A0A8I5KYC1 --
ENST00000637038.1SCN1A-2134268331aaENSP00000490184.1
 
Nonsense mediated decay
A0A1B0GUN7 -TSL:5CDS 5' incomplete
ENST00000636759.1SCN1A-2123606145aaENSP00000490895.1
 
Nonsense mediated decay
A0A1B0GWE6 -TSL:5
ENST00000642141.1SCN1A-221921No protein-
 
Protein coding CDS not defined
---
ENST00000635893.1SCN1A-210168No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000673490.1SCN1A-22310569No protein-
 
Retained intron
---
ENST00000637968.1SCN1A-2154614No protein-
 
Retained intron
--TSL:5
ENST00000507401.2SCN1A-206711No protein-
 
Retained intron
--TSL:3
ENST00000625916.1SCN1A-207560No protein-
 
Retained intron
--TSL:4
ENST00000473295.2SCN1A-204544No protein-
 
Retained intron
--TSL:4
ENST00000491429.1SCN1A-205542No protein-
 
Retained intron
--TSL:4
Statistics

Exons: 3, Coding exons: 0, Transcript length: 711 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000507401.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.