Human (GRCh38.p14)
Description

sodium voltage-gated channel alpha subunit 1 [Source:HGNC Symbol;Acc:HGNC:10585]

Gene Synonyms

FEB3, GEFSP2, HBSCI, NAC1, NAV1.1, SCN1, SMEI

About this transcript

This transcript has 12 exons, is associated with 20744 variant alleles and maps to 414 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000674923.1SCN1A-224119402009aaENSP00000501589.1
 
Protein coding
CCDS54413P35498-1 NM_001165963.4MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P4
ENST00000641575.1SCN1A-218128741997aaENSP00000492917.1
 
Protein coding
CCDS86891A0A286YF26 -GENCODE basicAPPRIS ALT1
ENST00000641603.1SCN1A-219125061915aaENSP00000492945.1
 
Protein coding
A0A286YEQ8 -GENCODE basic
ENST00000303395.9SCN1A-201118532009aaENSP00000303540.4
 
Protein coding
CCDS54413P35498-1 -GENCODE basicAPPRIS P4TSL:5
ENST00000635776.1SCN1A-209101071618aaENSP00000490692.1
 
Protein coding
A0A1B0GVX7 -GENCODE basicTSL:5
ENST00000637988.1SCN1A-21685621998aaENSP00000490780.1
 
Protein coding
CCDS33316P35498-2 -GENCODE basicAPPRIS ALT1TSL:5
ENST00000635750.1SCN1A-20882991998aaENSP00000490799.1
 
Protein coding
CCDS33316P35498-2 -GENCODE basicAPPRIS ALT1TSL:5
ENST00000640036.1SCN1A-21781311998aaENSP00000491573.1
 
Protein coding
A0A1W2PPJ3 -GENCODE basicTSL:5
ENST00000375405.7SCN1A-20280971998aaENSP00000364554.3
 
Protein coding
CCDS33316P35498-2 -GENCODE basicAPPRIS ALT1TSL:5
ENST00000409050.1SCN1A-20359461981aaENSP00000386312.1
 
Protein coding
CCDS54414P35498-3 -GENCODE basicTSL:5
ENST00000637285.2SCN1A-2141333aaENSP00000490612.1
 
Protein coding
--TSL:5CDS 3' incomplete
ENST00000641996.1SCN1A-22012903149aaENSP00000493054.1
 
Nonsense mediated decay
A0A286YFA8 --
ENST00000636194.1SCN1A-2118508829aaENSP00000490288.1
 
Nonsense mediated decay
A0A1B0GUX7 -TSL:5
ENST00000671940.1SCN1A-2228315629aaENSP00000500336.1
 
Nonsense mediated decay
A0A5F9ZHI6 --
ENST00000689288.1SCN1A-2258258685aaENSP00000509637.1
 
Nonsense mediated decay
A0A8I5KYC1 --
ENST00000637038.1SCN1A-2134268331aaENSP00000490184.1
 
Nonsense mediated decay
A0A1B0GUN7 -TSL:5CDS 5' incomplete
ENST00000636759.1SCN1A-2123606145aaENSP00000490895.1
 
Nonsense mediated decay
A0A1B0GWE6 -TSL:5
ENST00000642141.1SCN1A-221921No protein-
 
Protein coding CDS not defined
---
ENST00000635893.1SCN1A-210168No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000673490.1SCN1A-22310569No protein-
 
Retained intron
---
ENST00000637968.1SCN1A-2154614No protein-
 
Retained intron
--TSL:5
ENST00000507401.2SCN1A-206711No protein-
 
Retained intron
--TSL:3
ENST00000625916.1SCN1A-207560No protein-
 
Retained intron
--TSL:4
ENST00000473295.2SCN1A-204544No protein-
 
Retained intron
--TSL:4
ENST00000491429.1SCN1A-205542No protein-
 
Retained intron
--TSL:4
Statistics

Exons: 12, Coding exons: 7, Transcript length: 4,268 bps, Translation length: 331 residues

Transcript Support Level (TSL)

TSL:5

Incomplete CDS

CDS 5' incomplete

Version

ENST00000637038.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]