Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Orthologues
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ID History
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Gene: C9orf72 ENSSSCG00000011010

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Description

C9orf72-SMCR8 complex subunit [Source:VGNC Symbol;Acc:VGNC:96173]

Location

Primary_assembly 10: 38,389,331-38,415,901 forward strand.

Sscrofa11.1:CM000821.5

About this gene

This gene has 4 transcripts (splice variants) and 205 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000047297.2	C9orf72-203	3344	489aa	ENSSSCP00000050865.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B418	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000052740.2	C9orf72-204	3320	481aa	ENSSSCP00000049485.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AZU9 A0A4X1ULM5	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000012052.5	C9orf72-202	3138	461aa	ENSSSCP00000011744.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1TCE0 F1SE55	-
ENSSSCT00000051717.2	C9orf72-201	1344	373aa	ENSSSCP00000044619.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AL39 A0A8D0MFX3	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data