Gene: Col8a1 ENSRNOG00000039668

Description

collagen type VIII alpha 1 chain [Source:RGD Symbol;Acc:1309361]

Gene Synonyms

LOC304021

Location

mRatBN7.2:CM026984.1

About this gene

This gene has 2 transcripts (splice variants), 239 orthologues, 20 paralogues and is associated with 3 phenotypes.

Transcripts

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000060838.5	Col8a1-201	2692	744aa	ENSRNOP00000057564.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4AC70	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000113782.1	Col8a1-202	2432	743aa	ENSRNOP00000089355.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AA24	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,