Gene: Phf20l1 ENSRNOG00000005486

Description

PHD finger protein 20-like 1 [Source:RGD Symbol;Acc:1560141]

Gene Synonyms

LOC314964, MGC112686

Location

Primary_assembly 7: 98,330,580-98,396,526 forward strand.

mRatBN7.2:CM026980.1

About this gene

This gene has 3 transcripts (splice variants), 171 orthologues, 1 paralogue and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000095136.1	Phf20l1-202	6651	1016aa	ENSRNOP00000086359.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A3M7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000106420.1	Phf20l1-203	6642	1013aa	ENSRNOP00000088843.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A6Z4	-
ENSRNOT00000093254.2	Phf20l1-201	6573	990aa	ENSRNOP00000076201.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1W2Q6A4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,