Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SCOC ENSPTRG00000016460

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Description

short coiled-coil protein [Source:VGNC Symbol;Acc:VGNC:681]

Location

Chromosome 4: 143,671,191-143,735,411 forward strand.

Pan_tro_3.0:CM000318.3

About this gene

This gene has 4 transcripts (splice variants), 265 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000102997.1	SCOC-203	1969	159aa	ENSPTRP00000067148.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8K2T9 A0A6D2XX91	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000030596.6	SCOC-202	1860	122aa	ENSPTRP00000028257.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8K2S5 A0A6D2WXG3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000089785.1	SCOC-201	1161	127aa	ENSPTRP00000069955.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RZB2	-
ENSPTRT00000077916.1	SCOC-204	396	131aa	ENSPTRP00000065850.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RMB6 A0A6D2WG99	-

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Summary

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