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EnsemblEnsembl Home
Description

phosphate cytidylyltransferase 1, choline, alpha isoform [Source:MGI Symbol;Acc:MGI:88557]

Gene Synonyms

CTP:phosphocholine cytidylyltransferase alpha, CTalpha, Cctalpha, Ctpct, Cttalpha

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
Pcyt1a-201ENSMUST00000079791.114789367aaENSMUSP00000078721.5
 
Protein coding
CCDS28120P49586 GENCODE basicAPPRIS P1TSL:1
Pcyt1a-204ENSMUST00000115140.21857367aaENSMUSP00000110793.2
 
Protein coding
CCDS28120P49586 GENCODE basicAPPRIS P1TSL:1
Pcyt1a-202ENSMUST00000104893.101275367aaENSMUSP00000130056.2
 
Protein coding
CCDS28120P49586 GENCODE basicAPPRIS P1TSL:5
Pcyt1a-203ENSMUST00000115137.84244265aaENSMUSP00000110790.2
 
Protein coding
-D3Z3T5 GENCODE basicTSL:5
Pcyt1a-207ENSMUST00000141772.91539No protein-
 
Retained intron
--TSL:2
Pcyt1a-208ENSMUST00000231920.21129No protein-
 
Retained intron
---
Pcyt1a-206ENSMUST00000141421.2643No protein-
 
Retained intron
--TSL:3
Pcyt1a-205ENSMUST00000123199.8502No protein-
 
Retained intron
--TSL:3
Description

SRY (sex determining region Y)-box 6 [Source:MGI Symbol;Acc:MGI:98368]

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
Sox6-201ENSMUST00000072804.118227827aaENSMUSP00000072583.5
 
Protein coding
CCDS40098P40645-1 GENCODE basicAPPRIS P4TSL:1
Sox6-202ENSMUST00000106612.88193785aaENSMUSP00000102223.2
 
Protein coding
CCDS40097Q8BSS6 GENCODE basicAPPRIS ALT2TSL:1
Sox6-204ENSMUST00000166877.88079787aaENSMUSP00000129512.2
 
Protein coding
CCDS52369E9PUW0 GENCODE basicAPPRIS ALT2TSL:5
Sox6-205ENSMUST00000169129.85122787aaENSMUSP00000126404.2
 
Protein coding
CCDS52369E9PUW0 GENCODE basicAPPRIS ALT2TSL:1
Sox6-203ENSMUST00000166207.32825827aaENSMUSP00000129027.2
 
Protein coding
CCDS40098P40645-1 GENCODE basicAPPRIS P4TSL:1
Sox6-210ENSMUST00000206034.28668786aaENSMUSP00000145919.2
 
Protein coding
-A0A0U1RPC1 GENCODE basicAPPRIS ALT2TSL:5
Sox6-206ENSMUST00000205405.22903828aaENSMUSP00000145732.2
 
Protein coding
-A0A0U1RNW8 GENCODE basicAPPRIS ALT2TSL:5
Sox6-212ENSMUST00000206369.22863828aaENSMUSP00000145931.2
 
Protein coding
-A0A0U1RNW8 GENCODE basicAPPRIS ALT2TSL:5
Sox6-211ENSMUST00000206123.2448125aaENSMUSP00000145576.2
 
Protein coding
-A0A0U1RNI3 TSL:2CDS 3' incomplete
Sox6-207ENSMUST00000205479.2331111aaENSMUSP00000145561.2
 
Protein coding
-A0A0U1RNH0 TSL:3CDS 5' and 3' incomplete
Sox6-215ENSMUST00000206775.2828No protein-
 
Processed transcript
--TSL:5
Sox6-208ENSMUST00000205818.2479No protein-
 
Processed transcript
--TSL:5
Sox6-214ENSMUST00000206573.23855No protein-
 
Retained intron
--TSL:2
Sox6-209ENSMUST00000205980.22258No protein-
 
Retained intron
--TSL:5
Sox6-216ENSMUST00000206912.21980No protein-
 
Retained intron
--TSL:NA
Sox6-213ENSMUST00000206427.2553No protein-
 
Retained intron
--TSL:5
Description

trafficking protein, kinesin binding 1 [Source:MGI Symbol;Acc:MGI:1914345]

Gene Synonyms

2310001H13Rik, hyrt

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
Trak1-201ENSMUST00000045903.84827939aaENSMUSP00000044482.7
 
Protein coding
CCDS40810Q6PD31-1 GENCODE basicAPPRIS P2TSL:1
Trak1-209ENSMUST00000210798.35363606aaENSMUSP00000147646.2
 
Protein coding
-A0A1B0GRS7 GENCODE basicTSL:1
Trak1-211ENSMUST00000211187.24043731aaENSMUSP00000147624.2
 
Protein coding
-A0A1B0GRQ7 GENCODE basicTSL:5
Trak1-213ENSMUST00000211439.23533524aaENSMUSP00000148026.2
 
Protein coding
-A0A1B0GSQ2 GENCODE basicTSL:1
Trak1-215ENSMUST00000238988.23353968aaENSMUSP00000158925.2
 
Protein coding
-A0A5F8MPD8 GENCODE basicAPPRIS ALT2
Trak1-208ENSMUST00000210636.22197256aaENSMUSP00000148092.2
 
Protein coding
-Q80VE1 GENCODE basicTSL:1
Trak1-207ENSMUST00000210351.2918241aaENSMUSP00000147571.2
 
Protein coding
-A0A1B0GRL4 TSL:3CDS 3' incomplete
Trak1-205ENSMUST00000209446.2736234aaENSMUSP00000148017.2
 
Protein coding
-A0A1B0GSP3 TSL:3CDS 5' incomplete
Trak1-206ENSMUST00000209995.243424aaENSMUSP00000147885.2
 
Protein coding
-A0A1B0GSC9 TSL:2CDS 3' incomplete
Trak1-212ENSMUST00000211301.24052560aaENSMUSP00000147604.2
 
Nonsense mediated decay
-A0A1B0GRP1 TSL:1
Trak1-202ENSMUST00000209211.246254aaENSMUSP00000147805.2
 
Nonsense mediated decay
-A0A1B0GS60 TSL:5
Trak1-203ENSMUST00000209306.2651No protein-
 
Processed transcript
--TSL:2
Trak1-210ENSMUST00000211149.2510No protein-
 
Processed transcript
--TSL:3
Trak1-204ENSMUST00000209390.2351No protein-
 
Processed transcript
--TSL:3
Trak1-214ENSMUST00000211699.22149No protein-
 
Retained intron
--TSL:1
Description

FA complementation group A [Source:HGNC Symbol;Acc:HGNC:3582]

Gene Synonyms

FA-H, FAA, FACA, FAH, FANCH

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
FANCA-202ENST00000389301.854521455aaENSP00000373952.3
 
Protein coding
CCDS32515O15360-1 NM_000135.4MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS P4TSL:1
FANCA-230ENST00000568369.546011424aaENSP00000456829.1
 
Protein coding
CCDS67099O15360-3 -GENCODE basicAPPRIS ALT2TSL:2
FANCA-203ENST00000389302.71641297aaENSP00000373953.3
 
Protein coding
CCDS42221O15360-2 -GENCODE basicTSL:1
FANCA-205ENST00000543736.51000265aaENSP00000443409.1
 
Protein coding
CCDS86554Q0VAP4 -GENCODE basicTSL:1
FANCA-213ENST00000563673.51694316aaENSP00000456443.1
 
Protein coding
-H3BRX3 -GENCODE basicTSL:1
FANCA-204ENST00000534992.51088302aaENSP00000443675.1
 
Protein coding
-F5H8D5 -GENCODE basicTSL:1
FANCA-215ENST00000564475.5732240aaENSP00000454977.1
 
Protein coding
-H3BNS0 -TSL:2CDS 5' incomplete
FANCA-226ENST00000567879.5713214aaENSP00000457006.1
 
Protein coding
-H3BT40 -TSL:3CDS 5' incomplete
FANCA-208ENST00000561722.5696195aaENSP00000456608.1
 
Protein coding
-H3BSA3 -TSL:3CDS 5' incomplete
FANCA-216ENST00000564870.1460153aaENSP00000456481.1
 
Protein coding
-H3BS03 -TSL:3CDS 5' and 3' incomplete
FANCA-229ENST00000567988.5915109aaENSP00000454217.1
 
Nonsense mediated decay
-H3BM41 -TSL:5CDS 5' incomplete
FANCA-228ENST00000567943.1860158aaENSP00000455941.1
 
Nonsense mediated decay
-H3BQU1 -TSL:3
FANCA-218ENST00000565582.5812210aaENSP00000456722.1
 
Nonsense mediated decay
-H3BSI9 -TSL:3CDS 5' incomplete
FANCA-206ENST00000561660.1762182aaENSP00000456588.1
 
Nonsense mediated decay
-H3BS84 -TSL:5CDS 5' incomplete
FANCA-231ENST00000568626.1727168aaENSP00000455974.1
 
Nonsense mediated decay
-H3BQX1 -TSL:3CDS 5' incomplete
FANCA-211ENST00000563510.563351aaENSP00000456993.1
 
Nonsense mediated decay
-H3BT32 -TSL:5CDS 5' incomplete
FANCA-225ENST00000567621.5618125aaENSP00000456762.1
 
Nonsense mediated decay
-H3BSL6 -TSL:3CDS 5' incomplete
FANCA-210ENST00000563318.160577aaENSP00000457970.1
 
Nonsense mediated decay
-H3BV66 -TSL:5CDS 5' incomplete
FANCA-212ENST00000563513.1571114aaENSP00000455946.1
 
Nonsense mediated decay
-H3BQU6 -TSL:4
FANCA-224ENST00000567510.1461101aaENSP00000455969.1
 
Nonsense mediated decay
-H3BQW7 -TSL:3CDS 5' incomplete
FANCA-222ENST00000567205.141363aaENSP00000457027.1
 
Nonsense mediated decay
-H3BT53 -TSL:1CDS 5' incomplete
FANCA-220ENST00000566409.139541aaENSP00000457647.1
 
Nonsense mediated decay
-H3BUI1 -TSL:1CDS 5' incomplete
FANCA-223ENST00000567284.6479No protein-
 
Processed transcript
---TSL:3
FANCA-221ENST00000566889.52201No protein-
 
Retained intron
---TSL:1
FANCA-201ENST00000305699.151430No protein-
 
Retained intron
---TSL:2
FANCA-217ENST00000564969.5850No protein-
 
Retained intron
---TSL:3
FANCA-219ENST00000566133.1761No protein-
 
Retained intron
---TSL:3
FANCA-209ENST00000562424.1745No protein-
 
Retained intron
---TSL:2
FANCA-232ENST00000568983.5726No protein-
 
Retained intron
---TSL:2
FANCA-227ENST00000567883.5650No protein-
 
Retained intron
---TSL:2
FANCA-214ENST00000563767.1578No protein-
 
Retained intron
---TSL:3
FANCA-207ENST00000561667.1528No protein-
 
Retained intron
---TSL:4
Description

nucleoporin 205 [Source:HGNC Symbol;Acc:HGNC:18658]

Gene Synonyms

C7orf14, KIAA0225

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
NUP205-201ENST00000285968.1162642012aaENSP00000285968.6
 
Protein coding
CCDS34759Q92621 NM_015135.3MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
NUP205-205ENST00000472132.5553184aaENSP00000475665.1
 
Protein coding
-U3KQ97 -TSL:4CDS 5' and 3' incomplete
NUP205-206ENST00000477620.51800273aaENSP00000475318.1
 
Nonsense mediated decay
-U3KPX2 -TSL:5CDS 5' incomplete
NUP205-208ENST00000490439.165342aaENSP00000475877.1
 
Nonsense mediated decay
-U3KQH5 -TSL:3CDS 5' incomplete
NUP205-204ENST00000463247.157071aaENSP00000475539.1
 
Nonsense mediated decay
-U3KQ47 -TSL:4CDS 5' incomplete
NUP205-207ENST00000489493.1550No protein-
 
Processed transcript
---TSL:4
NUP205-210ENST00000607647.54518No protein-
 
Retained intron
---TSL:5
NUP205-202ENST00000461255.51447No protein-
 
Retained intron
---TSL:5
NUP205-203ENST00000462316.5571No protein-
 
Retained intron
---TSL:4
NUP205-209ENST00000491089.1553No protein-
 
Retained intron
---TSL:2
Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 [Source:HGNC Symbol;Acc:HGNC:11106]

Gene Synonyms

BAF60A, CRACD1, Rsc6p

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
SMARCD1-202ENST00000394963.93283515aaENSP00000378414.4
 
Protein coding
CCDS8797Q96GM5-1 NM_003076.5MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
SMARCD1-201ENST00000381513.83237474aaENSP00000370924.4
 
Protein coding
CCDS8798Q96GM5-2 -GENCODE basicTSL:1
SMARCD1-205ENST00000548573.52095313aaENSP00000448627.1
 
Protein coding
-F8VRQ4 -GENCODE basicTSL:5
SMARCD1-209ENST00000550477.5911289aaENSP00000448030.1
 
Protein coding
-F8VUB0 -TSL:3CDS 3' incomplete
SMARCD1-212ENST00000551966.5881278aaENSP00000447386.1
 
Protein coding
-F8VZ70 -TSL:5CDS 3' incomplete
SMARCD1-211ENST00000551497.1536113aaENSP00000449825.1
 
Protein coding
-F8VW95 -TSL:4CDS 3' incomplete
SMARCD1-206ENST00000549274.1611115aaENSP00000447909.1
 
Nonsense mediated decay
-H0YHV1 -TSL:3CDS 5' incomplete
SMARCD1-207ENST00000549526.1401No protein-
 
Processed transcript
---TSL:5
SMARCD1-203ENST00000547247.51584No protein-
 
Retained intron
---TSL:1
SMARCD1-210ENST00000551352.1621No protein-
 
Retained intron
---TSL:2
SMARCD1-204ENST00000547637.1587No protein-
 
Retained intron
---TSL:2
SMARCD1-208ENST00000550280.1567No protein-
 
Retained intron
---TSL:2
Description

adaptor related protein complex 2 subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:563]

Gene Synonyms

ADTB2, CLAPB1

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
AP2B1-211ENST00000610402.55700951aaENSP00000483185.1
 
Protein coding
CCDS32621P63010-2 NM_001030006.2MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
AP2B1-221ENST00000621914.45702937aaENSP00000482315.1
 
Protein coding
CCDS32622P63010-1 -GENCODE basicTSL:1
AP2B1-217ENST00000618940.43415951aaENSP00000482835.1
 
Protein coding
CCDS32621P63010-2 -GENCODE basicAPPRIS P1TSL:1
AP2B1-213ENST00000612116.53483677aaENSP00000478115.1
 
Protein coding
-A0A087WZQ6 -GENCODE basicTSL:1
AP2B1-215ENST00000616681.43267913aaENSP00000484708.1
 
Protein coding
-A0A087X253 -GENCODE basicTSL:2
AP2B1-216ENST00000616784.42542663aaENSP00000478471.1
 
Protein coding
-A0A087WU93 -TSL:5CDS 3' incomplete
AP2B1-214ENST00000614600.42285677aaENSP00000479691.1
 
Protein coding
-A0A087WZQ6 -TSL:5CDS 3' incomplete
AP2B1-212ENST00000612035.42161677aaENSP00000482825.1
 
Protein coding
-A0A087WZQ6 -TSL:5CDS 3' incomplete
AP2B1-220ENST00000621668.42055639aaENSP00000481704.1
 
Protein coding
-A0A087WYD1 -TSL:5CDS 3' incomplete
AP2B1-201ENST00000587805.1690181aaENSP00000466580.1
 
Protein coding
-K7EMN7 -TSL:2CDS 5' incomplete
AP2B1-210ENST00000593014.3577132aaENSP00000466812.1
 
Protein coding
-K7EN71 -TSL:4CDS 3' incomplete
AP2B1-205ENST00000590432.555480aaENSP00000465357.1
 
Protein coding
-K7EJX1 -TSL:4CDS 3' incomplete
AP2B1-204ENST00000589774.5552151aaENSP00000468183.1
 
Protein coding
-K7ERB2 -TSL:4CDS 3' incomplete
AP2B1-222ENST00000628168.119263aaENSP00000487324.1
 
Protein coding
-K7EKZ5 -GENCODE basicTSL:5
AP2B1-219ENST00000620039.4342849aaENSP00000481246.1
 
Nonsense mediated decay
-A0A087WXS3 -TSL:1
AP2B1-203ENST00000588116.1779164aaENSP00000464966.1
 
Nonsense mediated decay
-K7EJ01 -TSL:5CDS 5' incomplete
AP2B1-206ENST00000590538.556863aaENSP00000468813.1
 
Nonsense mediated decay
-K7EKZ5 -TSL:4
AP2B1-208ENST00000591610.555963aaENSP00000465848.1
 
Nonsense mediated decay
-K7EKZ5 -TSL:4
AP2B1-209ENST00000592167.546163aaENSP00000467382.1
 
Nonsense mediated decay
-K7EKZ5 -TSL:4
AP2B1-218ENST00000619183.11595No protein-
 
Processed transcript
---TSL:5
AP2B1-207ENST00000591561.5756No protein-
 
Processed transcript
---TSL:3
AP2B1-202ENST00000588093.1334No protein-
 
Processed transcript
---TSL:3
Description

LIM domain only 4 [Source:MGI Symbol;Acc:MGI:109360]

Gene Synonyms

A730077C12Rik, Crp3, Etohi4

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
Lmo4-201ENSMUST00000120539.81669165aaENSMUSP00000113840.2
 
Protein coding
CCDS51085P61969 Q542S1 GENCODE basicAPPRIS P1TSL:1
Lmo4-202ENSMUST00000121112.61447165aaENSMUSP00000113865.2
 
Protein coding
CCDS51085P61969 Q542S1 GENCODE basicAPPRIS P1TSL:1
Lmo4-203ENSMUST00000121796.81417165aaENSMUSP00000113513.2
 
Protein coding
CCDS51085P61969 Q542S1 GENCODE basicAPPRIS P1TSL:1
Lmo4-207ENSMUST00000196264.5126385aaENSMUSP00000143035.2
 
Protein coding
-A0A0G2JF61 GENCODE basicTSL:5
Lmo4-208ENSMUST00000197652.2571132aaENSMUSP00000142551.2
 
Protein coding
-A0A0G2JDX9 TSL:5CDS 3' incomplete
Lmo4-205ENSMUST00000134961.21630No protein-
 
Retained intron
--TSL:1
Lmo4-206ENSMUST00000148128.2812No protein-
 
Retained intron
--TSL:2
Lmo4-204ENSMUST00000124891.2482No protein-
 
Retained intron
--TSL:2
Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,669 bps, Translation length: 165 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS51085

Uniprot

This transcript corresponds to the following Uniprot identifiers: P61969

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000120539.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays

    HASH(0x24ea7c18)