Gene: Sec24c ENSMUSG00000039367

Description

SEC24 homolog C, COPII coat complex component [Source:MGI Symbol;Acc:MGI:1919746]

Gene Synonyms

2610204K03Rik

Location

Chromosome 14: 20,724,376-20,744,920 forward strand.

GRCm39:CM001007.3

About this gene

This gene has 15 transcripts (splice variants), 49 orthologues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000048657.10	Sec24c-201	4461	1096aa	ENSMUSP00000045955.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26850	G3X972	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000223751.2	Sec24c-202	4196	1020aa	ENSMUSP00000153434.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YDI8	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000225108.2	Sec24c-212	866	168aa	ENSMUSP00000152917.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCC8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000228545.2	Sec24c-215	715	239aa	ENSMUSP00000154291.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BQS4	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000224754.2	Sec24c-207	680	71aa	ENSMUSP00000152990.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCX0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000224492.2	Sec24c-204	563	119aa	ENSMUSP00000153455.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YDJ8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000224876.2	Sec24c-210	833	90aa	ENSMUSP00000153317.2	Nonsense mediated decay		A0A286YDN4	-
ENSMUST00000224791.2	Sec24c-208	724	174aa	ENSMUSP00000153039.2	Nonsense mediated decay		A0A286YD08	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000224718.2	Sec24c-205	971	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000224793.2	Sec24c-209	763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000224061.2	Sec24c-203	605	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000225566.2	Sec24c-213	557	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000225903.2	Sec24c-214	505	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000224722.2	Sec24c-206	472	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000224963.2	Sec24c-211	450	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-