Gene: Tbc1d23 ENSMUSG00000022749

Description

TBC1 domain family, member 23 [Source:MGI Symbol;Acc:MGI:1914831]

Gene Synonyms

4930451A13Rik, D030022P07Rik

Location

Chromosome 16: 56,989,225-57,051,867 reverse strand.

GRCm39:CM001009.3

About this gene

This gene has 10 transcripts (splice variants), 200 orthologues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000226586.2	Tbc1d23-203	3112	699aa	ENSMUSP00000154535.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BRD1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P3,
ENSMUST00000023431.8	Tbc1d23-201	3690	684aa	ENSMUSP00000023431.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28228	Q8K0F1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000228172.2	Tbc1d23-208	729	97aa	ENSMUSP00000153899.2	Nonsense mediated decay		A0A2I3BPS3	-
ENSMUST00000227359.2	Tbc1d23-205	853	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000226678.2	Tbc1d23-204	659	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000227681.2	Tbc1d23-207	490	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000231435.2	Tbc1d23-210	458	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000231391.2	Tbc1d23-209	451	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000227531.2	Tbc1d23-206	5302	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000226486.2	Tbc1d23-202	393	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-