Gene: Chtop ENSMUSG00000001017

Description

chromatin target of PRMT1 [Source:MGI Symbol;Acc:MGI:1913761]

Gene Synonyms

2500003M10Rik, Fop, friend of Prmt1

Location

Chromosome 3: 90,406,263-90,416,805 reverse strand.

GRCm39:CM000996.3

About this gene

This gene has 10 transcripts (splice variants), 240 orthologues, 20 paralogues and is associated with 102 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000249613.1	Chtop-210	2012	269aa	ENSMUSP00000159822.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000001043.14	Chtop-201	3257	224aa	ENSMUSP00000001043.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17532	Q9CY57-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000107343.8	Chtop-205	3118	178aa	ENSMUSP00000102966.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS79965	Q9CY57-4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000107344.8	Chtop-206	2972	224aa	ENSMUSP00000102967.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17532	Q9CY57-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000107342.2	Chtop-204	2411	177aa	ENSMUSP00000102965.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS79964	Q9CY57-5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000049937.13	Chtop-202	2012	249aa	ENSMUSP00000061800.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS79968	Q9CY57	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000076639.11	Chtop-203	1842	202aa	ENSMUSP00000075936.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS79966	Q9CY57-3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000107346.8	Chtop-207	1321	203aa	ENSMUSP00000102969.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS79967	E9PW20	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000146740.8	Chtop-209	889	195aa	ENSMUSP00000116945.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3Z7T7	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000131868.2	Chtop-208	637	123aa	ENSMUSP00000123448.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3YZA1	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,