Transcript: ENST00000649969.1 LUCAT1-239

Description

lung cancer associated transcript 1 [Source:HGNC Symbol;Acc:HGNC:48498]

Gene Synonyms

SCAL1, SCAT5

Location

Chromosome 5: 91,302,731-91,314,402 reverse strand.

About this transcript

This transcript has 10 exons, is associated with 4848 variant alleles and maps to 258 oligo probes.

Gene

This transcript is a product of gene ENSG00000248323.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000650150.1	LUCAT1-249	1357	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENST00000513626.3	LUCAT1-203	3072	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000647761.1	LUCAT1-207	3056	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000648822.1	LUCAT1-224	2666	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000650017.1	LUCAT1-244	2176	No protein	-	lncRNA	-	-
ENST00000649539.1	LUCAT1-235	2059	No protein	-	lncRNA	-	-
ENST00000650067.1	LUCAT1-246	2024	No protein	-	lncRNA	-	-
ENST00000648075.1	LUCAT1-211	1977	No protein	-	lncRNA	-	-
ENST00000649702.1	LUCAT1-237	1972	No protein	-	lncRNA	-	-
ENST00000650004.1	LUCAT1-242	1913	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000649304.1	LUCAT1-228	1773	No protein	-	lncRNA	-	-
ENST00000650273.1	LUCAT1-251	1757	No protein	-	lncRNA	-	-
ENST00000649969.1	LUCAT1-239	1711	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000648597.1	LUCAT1-218	1687	No protein	-	lncRNA	-	-
ENST00000670581.1	LUCAT1-261	1614	No protein	-	lncRNA	-	-
ENST00000648310.1	LUCAT1-214	1505	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000649467.1	LUCAT1-234	1498	No protein	-	lncRNA	-	-
ENST00000650008.1	LUCAT1-243	1457	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000649654.1	LUCAT1-236	1407	No protein	-	lncRNA	-	-
ENST00000668775.1	LUCAT1-260	1359	No protein	-	lncRNA	-	-
ENST00000649392.2	LUCAT1-230	1347	No protein	-	lncRNA	-	-
ENST00000650100.1	LUCAT1-248	1337	No protein	-	lncRNA	-	-
ENST00000648923.1	LUCAT1-226	1300	No protein	-	lncRNA	-	-
ENST00000650583.1	LUCAT1-255	1278	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000648031.1	LUCAT1-210	1260	No protein	-	lncRNA	-	-
ENST00000648905.1	LUCAT1-225	1227	No protein	-	lncRNA	-	-
ENST00000649138.1	LUCAT1-227	1222	No protein	-	lncRNA	-	-
ENST00000650003.1	LUCAT1-241	1212	No protein	-	lncRNA	-	-
ENST00000647807.1	LUCAT1-208	1204	No protein	-	lncRNA	-	-
ENST00000649405.1	LUCAT1-231	1179	No protein	-	lncRNA	-	-
ENST00000649447.2	LUCAT1-233	1173	No protein	-	lncRNA	-	-
ENST00000648439.1	LUCAT1-216	1149	No protein	-	lncRNA	-	-
ENST00000648137.2	LUCAT1-212	1145	No protein	-	lncRNA	-	-
ENST00000650047.1	LUCAT1-245	1080	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000648683.1	LUCAT1-220	1045	No protein	-	lncRNA	-	-
ENST00000648811.1	LUCAT1-223	1043	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000647745.1	LUCAT1-205	1042	No protein	-	lncRNA	-	-
ENST00000650321.1	LUCAT1-252	1012	No protein	-	lncRNA	-	-
ENST00000648773.1	LUCAT1-222	1007	No protein	-	lncRNA	-	-
ENST00000660484.1	LUCAT1-258	1004	No protein	-	lncRNA	-	-
ENST00000653155.1	LUCAT1-256	991	No protein	-	lncRNA	-	-
ENST00000650261.1	LUCAT1-250	969	No protein	-	lncRNA	-	-
ENST00000648636.1	LUCAT1-219	967	No protein	-	lncRNA	-	-
ENST00000648385.1	LUCAT1-215	960	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513492.6	LUCAT1-202	935	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000648015.1	LUCAT1-209	917	No protein	-	lncRNA	-	-
ENST00000654784.1	LUCAT1-257	901	No protein	-	lncRNA	-	-
ENST00000648199.1	LUCAT1-213	881	No protein	-	lncRNA	-	-
ENST00000649322.1	LUCAT1-229	857	No protein	-	lncRNA	-	-
ENST00000687742.1	LUCAT1-263	842	No protein	-	lncRNA	-	-
ENST00000650529.1	LUCAT1-254	820	No protein	-	lncRNA	-	-
ENST00000649976.1	LUCAT1-240	809	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000650381.1	LUCAT1-253	798	No protein	-	lncRNA	-	-
ENST00000650098.1	LUCAT1-247	793	No protein	-	lncRNA	-	-
ENST00000664701.1	LUCAT1-259	768	No protein	-	lncRNA	-	-
ENST00000511918.6	LUCAT1-201	737	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000649968.1	LUCAT1-238	646	No protein	-	lncRNA	-	-
ENST00000647759.1	LUCAT1-206	604	No protein	-	lncRNA	-	-
ENST00000649424.1	LUCAT1-232	601	No protein	-	lncRNA	-	-
ENST00000648751.2	LUCAT1-221	570	No protein	-	lncRNA	-	-
ENST00000607854.1	LUCAT1-204	549	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000690504.1	LUCAT1-264	518	No protein	-	lncRNA	-	-
ENST00000690915.1	LUCAT1-265	464	No protein	-	lncRNA	-	-
ENST00000685632.1	LUCAT1-262	409	No protein	-	lncRNA	-	-
ENST00000648457.1	LUCAT1-217	374	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 1,711 bps,

Version

ENST00000649969.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000649969.1 LUCAT1-239

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Transcript: ENST00000649969.1 LUCAT1-239

Summary

About Us

Get help

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