Human (GRCh38.p14)
Description

SOX2 overlapping transcript [Source:HGNC Symbol;Acc:HGNC:20209]

Gene Synonyms

DKFZP761J1324, NCRNA00043, SOX2OT

About this transcript

This transcript has 4 exons, is associated with 49194 variant alleles and maps to 136 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSRefSeq MatchFlags
ENST00000626948.3SOX2-OT-2401584No protein-
 
lncRNA
-Ensembl CanonicalGENCODE basicTSL:5
ENST00000656613.1SOX2-OT-2924289No protein-
 
lncRNA
-GENCODE basic
ENST00000670501.1SOX2-OT-3024282No protein-
 
lncRNA
--
ENST00000665187.1SOX2-OT-2984263No protein-
 
lncRNA
-GENCODE basic
ENST00000671456.1SOX2-OT-3034240No protein-
 
lncRNA
--
ENST00000657986.1SOX2-OT-2934162No protein-
 
lncRNA
--
ENST00000646698.1SOX2-OT-2824109No protein-
 
lncRNA
--
ENST00000660576.1SOX2-OT-2944101No protein-
 
lncRNA
--
ENST00000600801.7SOX2-OT-2344085No protein-
 
lncRNA
-TSL:5
ENST00000661842.1SOX2-OT-2954077No protein-
 
lncRNA
--
ENST00000654649.1SOX2-OT-2914032No protein-
 
lncRNA
--
ENST00000596250.7SOX2-OT-2253985No protein-
 
lncRNA
-GENCODE basicTSL:5
ENST00000498731.6SOX2-OT-2183964No protein-
 
lncRNA
-TSL:1
ENST00000645583.2SOX2-OT-2753870No protein-
 
lncRNA
--
ENST00000646841.2SOX2-OT-2843868No protein-
 
lncRNA
--
ENST00000654538.1SOX2-OT-2903844No protein-
 
lncRNA
-GENCODE basic
ENST00000665033.1SOX2-OT-2963529No protein-
 
lncRNA
--
ENST00000665112.1SOX2-OT-2973462No protein-
 
lncRNA
--
ENST00000647055.1SOX2-OT-2873274No protein-
 
lncRNA
-GENCODE basic
ENST00000476964.6SOX2-OT-2073226No protein-
 
lncRNA
-GENCODE basicTSL:1
ENST00000647034.2SOX2-OT-2863006No protein-
 
lncRNA
-GENCODE basic
ENST00000493116.6SOX2-OT-2142779No protein-
 
lncRNA
-TSL:4
ENST00000643236.2SOX2-OT-2672454No protein-
 
lncRNA
-GENCODE basic
ENST00000665485.1SOX2-OT-2992297No protein-
 
lncRNA
-GENCODE basic
ENST00000642685.1SOX2-OT-2632276No protein-
 
lncRNA
-GENCODE basic
ENST00000642301.2SOX2-OT-2602271No protein-
 
lncRNA
-GENCODE basic
ENST00000492337.6SOX2-OT-2132184No protein-
 
lncRNA
-TSL:2
ENST00000667332.1SOX2-OT-3002112No protein-
 
lncRNA
--
ENST00000646296.2SOX2-OT-2792094No protein-
 
lncRNA
--
ENST00000642652.2SOX2-OT-2622042No protein-
 
lncRNA
-GENCODE basic
ENST00000646949.2SOX2-OT-2851980No protein-
 
lncRNA
-GENCODE basic
ENST00000643769.1SOX2-OT-2691967No protein-
 
lncRNA
-GENCODE basic
ENST00000644582.1SOX2-OT-2721884No protein-
 
lncRNA
-GENCODE basic
ENST00000466034.7SOX2-OT-2031772No protein-
 
lncRNA
-TSL:1
ENST00000646683.1SOX2-OT-2811766No protein-
 
lncRNA
-GENCODE basic
ENST00000668295.3SOX2-OT-3011745No protein-
 
lncRNA
-GENCODE basic
ENST00000644358.1SOX2-OT-2711703No protein-
 
lncRNA
-GENCODE basic
ENST00000628810.2SOX2-OT-2481675No protein-
 
lncRNA
-GENCODE basicTSL:5
ENST00000643667.1SOX2-OT-2681622No protein-
 
lncRNA
--
ENST00000645423.2SOX2-OT-2741583No protein-
 
lncRNA
--
ENST00000642218.1SOX2-OT-2591500No protein-
 
lncRNA
-GENCODE basic
ENST00000642922.1SOX2-OT-2651468No protein-
 
lncRNA
-GENCODE basic
ENST00000642823.1SOX2-OT-2641444No protein-
 
lncRNA
--
ENST00000626299.4SOX2-OT-2371412No protein-
 
lncRNA
-GENCODE basicTSL:5
ENST00000646508.1SOX2-OT-2801390No protein-
 
lncRNA
-GENCODE basic
ENST00000597347.5SOX2-OT-2261342No protein-
 
lncRNA
-GENCODE basicTSL:5
ENST00000626802.3SOX2-OT-2391336No protein-
 
lncRNA
-TSL:5
ENST00000690586.1SOX2-OT-3131327No protein-
 
lncRNA
--
ENST00000642429.1SOX2-OT-2611279No protein-
 
lncRNA
--
ENST00000644732.1SOX2-OT-2731242No protein-
 
lncRNA
--
ENST00000691318.1SOX2-OT-3141240No protein-
 
lncRNA
--
ENST00000493521.5SOX2-OT-2151239No protein-
 
lncRNA
-TSL:3
ENST00000647552.1SOX2-OT-2891238No protein-
 
lncRNA
--
ENST00000645960.1SOX2-OT-2761199No protein-
 
lncRNA
--
ENST00000485035.3SOX2-OT-2091162No protein-
 
lncRNA
-TSL:4
ENST00000644304.1SOX2-OT-2701115No protein-
 
lncRNA
--
ENST00000643131.2SOX2-OT-2661097No protein-
 
lncRNA
--
ENST00000647179.1SOX2-OT-2881068No protein-
 
lncRNA
--
ENST00000693669.1SOX2-OT-3151055No protein-
 
lncRNA
--
ENST00000491282.6SOX2-OT-2121040No protein-
 
lncRNA
-TSL:1
ENST00000627501.4SOX2-OT-2411036No protein-
 
lncRNA
-TSL:5
ENST00000630482.2SOX2-OT-2551012No protein-
 
lncRNA
-TSL:5
ENST00000646712.1SOX2-OT-283989No protein-
 
lncRNA
--
ENST00000476125.5SOX2-OT-206979No protein-
 
lncRNA
-TSL:3
ENST00000631025.2SOX2-OT-258954No protein-
 
lncRNA
-TSL:5
ENST00000630553.1SOX2-OT-256905No protein-
 
lncRNA
-GENCODE basicTSL:5
ENST00000477928.1SOX2-OT-208902No protein-
 
lncRNA
-TSL:2
ENST00000627530.3SOX2-OT-242873No protein-
 
lncRNA
-TSL:5
ENST00000597828.5SOX2-OT-228864No protein-
 
lncRNA
-TSL:5
ENST00000685767.1SOX2-OT-306859No protein-
 
lncRNA
--
ENST00000595084.3SOX2-OT-222850No protein-
 
lncRNA
-TSL:5
ENST00000628211.2SOX2-OT-244847No protein-
 
lncRNA
-TSL:5
ENST00000599082.2SOX2-OT-231836No protein-
 
lncRNA
-TSL:5
ENST00000685509.1SOX2-OT-305831No protein-
 
lncRNA
--
ENST00000629781.4SOX2-OT-252818No protein-
 
lncRNA
-TSL:5
ENST00000686782.2SOX2-OT-308799No protein-
 
lncRNA
--
ENST00000628496.3SOX2-OT-247798No protein-
 
lncRNA
-TSL:5
ENST00000646056.1SOX2-OT-278796No protein-
 
lncRNA
--
ENST00000688647.1SOX2-OT-310792No protein-
 
lncRNA
--
ENST00000600386.6SOX2-OT-232789No protein-
 
lncRNA
-TSL:5
ENST00000629112.4SOX2-OT-249782No protein-
 
lncRNA
-TSL:5
ENST00000630887.4SOX2-OT-257771No protein-
 
lncRNA
-TSL:5
ENST00000600778.3SOX2-OT-233762No protein-
 
lncRNA
-TSL:5
ENST00000702256.1SOX2-OT-318760No protein-
 
lncRNA
--
ENST00000593549.6SOX2-OT-220753No protein-
 
lncRNA
-TSL:5
ENST00000487240.3SOX2-OT-210751No protein-
 
lncRNA
-TSL:5
ENST00000628343.3SOX2-OT-245743No protein-
 
lncRNA
-TSL:5
ENST00000702337.1SOX2-OT-319737No protein-
 
lncRNA
--
ENST00000595313.5SOX2-OT-224716No protein-
 
lncRNA
-TSL:5
ENST00000689495.1SOX2-OT-311705No protein-
 
lncRNA
--
ENST00000629830.4SOX2-OT-253700No protein-
 
lncRNA
-TSL:5
ENST00000685088.1SOX2-OT-304694No protein-
 
lncRNA
--
ENST00000627738.1SOX2-OT-243692No protein-
 
lncRNA
-TSL:5
ENST00000686214.1SOX2-OT-307679No protein-
 
lncRNA
--
ENST00000594942.5SOX2-OT-221675No protein-
 
lncRNA
-TSL:5
ENST00000702225.1SOX2-OT-317662No protein-
 
lncRNA
-GENCODE basic
ENST00000626619.2SOX2-OT-238660No protein-
 
lncRNA
-GENCODE basicTSL:5
ENST00000630150.2SOX2-OT-254649No protein-
 
lncRNA
-TSL:5
ENST00000597651.6SOX2-OT-227626No protein-
 
lncRNA
-TSL:5
ENST00000693697.1SOX2-OT-316610No protein-
 
lncRNA
--
ENST00000460739.5SOX2-OT-201609No protein-
 
lncRNA
-TSL:4
ENST00000687464.2SOX2-OT-309586No protein-
 
lncRNA
--
ENST00000689942.1SOX2-OT-312585No protein-
 
lncRNA
--
ENST00000595287.1SOX2-OT-223581No protein-
 
lncRNA
-TSL:5
ENST00000497122.5SOX2-OT-216578No protein-
 
lncRNA
-TSL:4
ENST00000629273.2SOX2-OT-250575No protein-
 
lncRNA
-TSL:5
ENST00000629552.2SOX2-OT-251572No protein-
 
lncRNA
-TSL:5
ENST00000461063.6SOX2-OT-202566No protein-
 
lncRNA
-TSL:3
ENST00000469278.5SOX2-OT-204561No protein-
 
lncRNA
-TSL:4
ENST00000498226.5SOX2-OT-217560No protein-
 
lncRNA
-TSL:4
ENST00000598474.4SOX2-OT-229512No protein-
 
lncRNA
-TSL:5
ENST00000625581.2SOX2-OT-236495No protein-
 
lncRNA
-TSL:5
ENST00000600962.6SOX2-OT-235469No protein-
 
lncRNA
-TSL:5
ENST00000593330.1SOX2-OT-219468No protein-
 
lncRNA
-TSL:3
ENST00000472856.1SOX2-OT-205454No protein-
 
lncRNA
-TSL:2
ENST00000628347.1SOX2-OT-246445No protein-
 
lncRNA
-TSL:5
ENST00000645983.1SOX2-OT-277392No protein-
 
lncRNA
--
ENST00000490005.2SOX2-OT-211383No protein-
 
lncRNA
-TSL:2
ENST00000598867.1SOX2-OT-230348No protein-
 
lncRNA
-TSL:5
Statistics

Exons: 4, Coding exons: 0, Transcript length: 694 bps,

Version

ENST00000685088.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.