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EnsemblEnsembl Home
Description

estrogen receptor 1 [Source:RGD Symbol;Acc:2581]

Gene Synonyms

ER-alpha, Er alpha, Esr

Location
NameTranscript IDbpProteinTranslation IDBiotypeUniProt MatchFlags
Esr1-203ENSRNOT00000081017.15116600aaENSRNOP00000072170.1
 
Protein coding
D0FYH4 APPRIS P1
Esr1-201ENSRNOT00000026350.72100600aaENSRNOP00000026350.7
 
Protein coding
D0FYH4 APPRIS P1
Esr1-202ENSRNOT00000078494.11899632aaENSRNOP00000071400.1
 
Protein coding
A0A0G2K0D4 -
Esr1-205ENSRNOT00000088168.11857618aaENSRNOP00000071034.1
 
Protein coding
A0A0G2JZG2 -
Esr1-207ENSRNOT00000089984.177841aaENSRNOP00000070339.1
 
Protein coding
A0A0G2JXN1 CDS 5' incomplete
Esr1-204ENSRNOT00000082133.1512125aaENSRNOP00000071981.1
 
Protein coding
A0A0G2K1T9 CDS 3' incomplete
Esr1-206ENSRNOT00000088678.1646No protein-
 
Processed transcript
--
Description

mitochondrial inner membrane protein MPV17 [Source:HGNC Symbol;Acc:HGNC:7224]

Gene Synonyms

SYM1

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
MPV17-203ENST00000380044.61002176aaENSP00000369383.1
 
Protein coding
CCDS1748A0A0S2Z3Z9 P39210 NM_002437.5MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
MPV17-201ENST00000233545.6998176aaENSP00000233545.2
 
Protein coding
CCDS1748A0A0S2Z3Z9 P39210 -GENCODE basicAPPRIS P1TSL:1
MPV17-202ENST00000357186.102011120aaENSP00000349713.6
 
Protein coding
-A8MPV4 -GENCODE basicTSL:2
MPV17-205ENST00000402310.5906170aaENSP00000383955.1
 
Protein coding
-B5MC53 -GENCODE basicTSL:5
MPV17-209ENST00000405983.5859191aaENSP00000384586.1
 
Protein coding
-E7EX18 -GENCODE basicTSL:5
MPV17-206ENST00000402722.582799aaENSP00000386000.1
 
Protein coding
-B5MC10 -GENCODE basicTSL:3
MPV17-204ENST00000399052.8749110aaENSP00000382006.4
 
Protein coding
-A8MTD3 -GENCODE basicTSL:4
MPV17-207ENST00000403262.6665171aaENSP00000385671.1
 
Protein coding
-B5MCF8 -GENCODE basicTSL:1
MPV17-208ENST00000405076.5603113aaENSP00000385175.1
 
Protein coding
-G5E9F5 -GENCODE basicTSL:5
MPV17-212ENST00000428910.5575115aaENSP00000405235.1
 
Protein coding
-C9J473 -TSL:5CDS 3' incomplete
MPV17-213ENST00000430991.5482121aaENSP00000406441.1
 
Protein coding
-H0Y6M5 -TSL:5CDS 5' incomplete
MPV17-211ENST00000426513.690599aaENSP00000403824.2
 
Nonsense mediated decay
-B5MC10 -TSL:3
MPV17-210ENST00000415514.559779aaENSP00000388043.1
 
Nonsense mediated decay
-F8WEL3 -TSL:5
MPV17-220ENST00000620797.4624No protein-
 
Processed transcript
---TSL:3
MPV17-218ENST00000616707.12315No protein-
 
Retained intron
---TSL:NA
MPV17-219ENST00000617583.4965No protein-
 
Retained intron
---TSL:2
MPV17-221ENST00000621183.4896No protein-
 
Retained intron
---TSL:5
MPV17-223ENST00000622003.4794No protein-
 
Retained intron
---TSL:5
MPV17-222ENST00000621470.4671No protein-
 
Retained intron
---TSL:3
MPV17-216ENST00000494436.1590No protein-
 
Retained intron
---TSL:2
MPV17-215ENST00000486898.1565No protein-
 
Retained intron
---TSL:4
MPV17-217ENST00000616446.1546No protein-
 
Retained intron
---TSL:2
MPV17-214ENST00000475085.1503No protein-
 
Retained intron
---TSL:2
Description

PAX6 upstream antisense RNA [Source:HGNC Symbol;Acc:HGNC:49670]

Location
Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSRefSeq MatchFlags
PAUPAR-212ENST00000644607.12341No protein-
 
lncRNA
--Ensembl CanonicalGENCODE basic
PAUPAR-203ENST00000630360.12965No protein-
 
lncRNA
--TSL:NA
PAUPAR-208ENST00000643436.12239No protein-
 
lncRNA
--GENCODE basic
PAUPAR-204ENST00000642237.12232No protein-
 
lncRNA
---
PAUPAR-215ENST00000645942.12112No protein-
 
lncRNA
---
PAUPAR-210ENST00000643826.12071No protein-
 
lncRNA
---
PAUPAR-205ENST00000642549.11996No protein-
 
lncRNA
---
PAUPAR-218ENST00000647350.11888No protein-
 
lncRNA
---
PAUPAR-206ENST00000642614.11877No protein-
 
lncRNA
---
PAUPAR-211ENST00000643931.11816No protein-
 
lncRNA
--GENCODE basic
PAUPAR-216ENST00000646221.11750No protein-
 
lncRNA
--GENCODE basic
PAUPAR-213ENST00000645824.11746No protein-
 
lncRNA
---
PAUPAR-217ENST00000646959.11724No protein-
 
lncRNA
---
PAUPAR-209ENST00000643671.11663No protein-
 
lncRNA
---
PAUPAR-201ENST00000506388.21658No protein-
 
lncRNA
--TSL:1
PAUPAR-214ENST00000645848.11604No protein-
 
lncRNA
---
PAUPAR-207ENST00000642818.11454No protein-
 
lncRNA
---
PAUPAR-202ENST00000530146.21033No protein-
 
lncRNA
--TSL:3
Description

deltex E3 ubiquitin ligase 2 [Source:HGNC Symbol;Acc:HGNC:15973]

Gene Synonyms

KIAA1528, RNF58

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
DTX2-227ENST00000632696.11032212aaENSP00000487782.1
 
Protein coding
-Q75MM6 -Ensembl CanonicalGENCODE basicTSL:1CDS 5' incomplete
DTX2-231ENST00000634040.11029212aaENSP00000488533.1
 
Protein coding
-Q75MM6 -TSL:1CDS 5' incomplete
DTX2-224ENST00000631645.11029212aaENSP00000488660.1
 
Protein coding
-Q75MM6 -TSL:1CDS 5' incomplete
DTX2-225ENST00000631700.11026212aaENSP00000488350.1
 
Protein coding
-Q75MM6 -TSL:1CDS 5' incomplete
DTX2-226ENST00000631991.1681212aaENSP00000487729.1
 
Protein coding
-Q75MM6 -TSL:1CDS 5' incomplete
DTX2-230ENST00000633541.136626aaENSP00000488433.1
 
Nonsense mediated decay
-A0A0J9YXJ6 -TSL:5CDS 5' incomplete
DTX2-229ENST00000633343.11438No protein-
 
Retained intron
---TSL:1
DTX2-222ENST00000631512.11033No protein-
 
Retained intron
---TSL:1
DTX2-223ENST00000631607.1776No protein-
 
Retained intron
---TSL:2
DTX2-228ENST00000632861.1159No protein-
 
Retained intron
---TSL:NA
Description

mitogen-activated protein kinase kinase kinase 19 [Source:HGNC Symbol;Acc:HGNC:26249]

Gene Synonyms

FLJ23074, RCK, YSK4

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
MAP3K19-204ENST00000392915.750321328aaENSP00000376647.2
 
Protein coding
CCDS2176Q56UN5-1 NM_025052.5MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS P2TSL:5
MAP3K19-203ENST00000375845.843691328aaENSP00000365005.3
 
Protein coding
CCDS2176Q56UN5-1 -GENCODE basicAPPRIS P2TSL:1
MAP3K19-201ENST00000358371.940441215aaENSP00000351140.4
 
Protein coding
CCDS63020Q56UN5-3 -GENCODE basicAPPRIS ALT2TSL:1
MAP3K19-202ENST00000375844.71604510aaENSP00000365004.3
 
Protein coding
CCDS33293Q56UN5-5 -GENCODE basicAPPRIS ALT2TSL:1
MAP3K19-206ENST00000392918.71460462aaENSP00000376650.3
 
Protein coding
CCDS63022Q56UN5-4 -GENCODE basicTSL:1
MAP3K19-205ENST00000392917.81453460aaENSP00000376649.3
 
Protein coding
CCDS63021Q56UN5-7 -GENCODE basicTSL:1
MAP3K19-213ENST00000637841.13281910aaENSP00000489676.1
 
Protein coding
-A0A1B0GTF4 -TSL:5CDS 3' incomplete
MAP3K19-209ENST00000437365.22719697aaENSP00000392827.1
 
Protein coding
-H7C041 -TSL:2CDS 5' incomplete
MAP3K19-215ENST00000656750.1708157aaENSP00000499601.1
 
Protein coding
-A0A590UJV9 -CDS 3' incomplete
MAP3K19-207ENST00000414343.154121aaENSP00000416345.1
 
Protein coding
-C9JGQ2 -TSL:5CDS 3' incomplete
MAP3K19-219ENST00000662522.14793212aaENSP00000499456.1
 
Nonsense mediated decay
-A0A590UJK1 --
MAP3K19-214ENST00000638025.24348No protein-
 
Processed transcript
---TSL:2
MAP3K19-217ENST00000661220.11253No protein-
 
Processed transcript
----
MAP3K19-208ENST00000425952.6842No protein-
 
Processed transcript
---TSL:4
MAP3K19-216ENST00000658678.1749No protein-
 
Processed transcript
----
MAP3K19-212ENST00000486077.2605No protein-
 
Processed transcript
---TSL:4
MAP3K19-222ENST00000669737.1476No protein-
 
Processed transcript
----
MAP3K19-221ENST00000669521.12011No protein-
 
Retained intron
----
MAP3K19-220ENST00000668969.11483No protein-
 
Retained intron
----
MAP3K19-210ENST00000468155.51405No protein-
 
Retained intron
---TSL:1
MAP3K19-218ENST00000661533.11398No protein-
 
Retained intron
----
MAP3K19-211ENST00000478805.11105No protein-
 
Retained intron
---TSL:1
Description

chemokine (C-C motif) ligand 27A [Source:MGI Symbol;Acc:MGI:1343459]

Gene Synonyms

ALP, CTACK, CTAK, Ccl27, ESkine, ILC, PESKY, Scya27, Scya27a, mILC, skinskine

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
Ccl27a-205ENSMUST00000108036.8841164aaENSMUSP00000103671.2
 
Protein coding
CCDS38721A2AMS7 GENCODE basicAPPRIS ALT2TSL:2
Ccl27a-204ENSMUST00000108035.8731127aaENSMUSP00000103670.2
 
Protein coding
CCDS84714A2AMS6 GENCODE basicAPPRIS ALT2TSL:1
Ccl27a-219ENSMUST00000173865.965787aaENSMUSP00000133827.2
 
Protein coding
CCDS51144A2AMS8 GENCODE basicTSL:1
Ccl27a-206ENSMUST00000108037.9590164aaENSMUSP00000103672.3
 
Protein coding
CCDS38721A2AMS7 GENCODE basicAPPRIS ALT2TSL:2
Ccl27a-201ENSMUST00000074387.4405120aaENSMUSP00000073990.4
 
Protein coding
CCDS18072A0A0R4J0X6 GENCODE basicAPPRIS P3TSL:1
Ccl27a-202ENSMUST00000108032.335087aaENSMUSP00000103667.3
 
Protein coding
CCDS51144A2AMS8 GENCODE basicTSL:1
Ccl27a-217ENSMUST00000155240.234387aaENSMUSP00000154105.2
 
Protein coding
CCDS51144A2AMS8 GENCODE basicTSL:2
Ccl27a-203ENSMUST00000108033.8428119aaENSMUSP00000103668.2
 
Protein coding
-A2AMS5 GENCODE basicAPPRIS ALT2TSL:1
Ccl27a-215ENSMUST00000151142.882237aaENSMUSP00000154658.2
 
Nonsense mediated decay
-A0A2I3BRY3 TSL:3
Ccl27a-208ENSMUST00000131349.848940aaENSMUSP00000154160.2
 
Nonsense mediated decay
-A0A2I3BQE5 TSL:3
Ccl27a-218ENSMUST00000155322.846040aaENSMUSP00000153974.2
 
Nonsense mediated decay
-A0A2I3BQE5 TSL:3
Ccl27a-214ENSMUST00000144090.8996No protein-
 
Retained intron
--TSL:2
Ccl27a-210ENSMUST00000133572.8798No protein-
 
Retained intron
--TSL:2
Ccl27a-216ENSMUST00000151909.8614No protein-
 
Retained intron
--TSL:1
Ccl27a-211ENSMUST00000136768.8556No protein-
 
Retained intron
--TSL:1
Ccl27a-212ENSMUST00000138337.8552No protein-
 
Retained intron
--TSL:2
Ccl27a-213ENSMUST00000143676.2487No protein-
 
Retained intron
--TSL:2
Ccl27a-209ENSMUST00000133556.8453No protein-
 
Retained intron
--TSL:2
Ccl27a-207ENSMUST00000126759.2361No protein-
 
Retained intron
--TSL:3
Description

DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745]

Gene Synonyms

DBX, DDX14, DDX3, HLP2

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
DDX3X-244ENST00000644876.24635662aaENSP00000494040.1
 
Protein coding
CCDS43931O00571-1 NM_001356.5MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS P4
DDX3X-217ENST00000629496.35036662aaENSP00000487224.1
 
Protein coding
CCDS43931O00571-1 -GENCODE basicAPPRIS P4TSL:5
DDX3X-203ENST00000457138.74786646aaENSP00000392494.2
 
Protein coding
CCDS55404O00571-2 -GENCODE basicTSL:2
DDX3X-263ENST00000646679.14693475aaENSP00000494887.1
 
Protein coding
CCDS87736A0A2R8YDT5 -GENCODE basic
DDX3X-260ENST00000646319.14554661aaENSP00000495377.1
 
Protein coding
CCDS87734A0A2R8YFS5 -GENCODE basicAPPRIS ALT1
DDX3X-225ENST00000642424.15789476aaENSP00000496356.1
 
Protein coding
-A0A2R8Y7T2 -GENCODE basic
DDX3X-201ENST00000399959.74632661aaENSP00000382840.3
 
Protein coding
-A0A2U3TZJ9 -GENCODE basicAPPRIS ALT1TSL:1
DDX3X-238ENST00000644074.14620660aaENSP00000496663.1
 
Protein coding
-A0A2R8YFR4 -GENCODE basicAPPRIS ALT1
DDX3X-243ENST00000644677.14457622aaENSP00000496524.1
 
Protein coding
-A0A2R8Y5G6 -GENCODE basic
DDX3X-257ENST00000646122.14435641aaENSP00000496222.1
 
Protein coding
-A0A2R8YF78 -GENCODE basic
DDX3X-239ENST00000644109.14409716aaENSP00000494952.1
 
Protein coding
-A0A2R8Y645 -GENCODE basic
DDX3X-237ENST00000644073.14349647aaENSP00000493475.1
 
Protein coding
-A0A2R8YCW1 -GENCODE basic
DDX3X-224ENST00000642322.14273476aaENSP00000496052.1
 
Protein coding
-A0A2R8Y7T2 -GENCODE basic
DDX3X-242ENST00000644513.14245662aaENSP00000493819.1
 
Protein coding
-A0A2R8Y4A4 -GENCODE basicAPPRIS ALT1
DDX3X-256ENST00000646107.14231622aaENSP00000494518.1
 
Protein coding
-A0A2R8Y5G6 -GENCODE basic
DDX3X-202ENST00000441189.44122629aaENSP00000414281.3
 
Protein coding
-F6S8Q4 -GENCODE basicTSL:2
DDX3X-215ENST00000625837.23237733aaENSP00000486306.1
 
Protein coding
-A0A0D9SF53 -GENCODE basicTSL:5
DDX3X-216ENST00000626301.23013640aaENSP00000486443.1
 
Protein coding
-A0A0D9SFB3 -GENCODE basicTSL:5
DDX3X-262ENST00000646627.12469476aaENSP00000493795.1
 
Protein coding
-A0A2R8Y7T2 -GENCODE basic
DDX3X-235ENST00000643821.1143440aaENSP00000493997.1
 
Protein coding
-A0A2R8YF31 -GENCODE basic
DDX3X-212ENST00000616050.3844222aaENSP00000487626.2
 
Protein coding
-A0A0J9YVQ7 -TSL:5CDS 5' incomplete
DDX3X-209ENST00000611968.2782189aaENSP00000479790.2
 
Protein coding
-A0A087WVZ1 -TSL:3CDS 5' incomplete
DDX3X-210ENST00000615313.557096aaENSP00000496257.1
 
Protein coding
-A0A2R8YF89 -TSL:4CDS 3' incomplete
DDX3X-218ENST00000629785.23457662aaENSP00000486516.1
 
Nonsense mediated decay
CCDS43931O00571-1 -TSL:5
DDX3X-204ENST00000478993.53397662aaENSP00000478443.1
 
Nonsense mediated decay
CCDS43931O00571-1 -TSL:1
DDX3X-219ENST00000630255.23289662aaENSP00000486720.1
 
Nonsense mediated decay
CCDS43931O00571-1 -TSL:5
DDX3X-259ENST00000646223.1620361aaENSP00000496043.1
 
Nonsense mediated decay
-A0A2R8Y770 --
DDX3X-246ENST00000645080.1559440aaENSP00000494767.1
 
Nonsense mediated decay
-A0A2R8YF31 --
DDX3X-232ENST00000642793.14596181aaENSP00000493976.1
 
Nonsense mediated decay
-A0A2R8YCU0 --
DDX3X-236ENST00000643963.14467193aaENSP00000495264.1
 
Nonsense mediated decay
-A0A2R8Y650 --
DDX3X-253ENST00000645589.14239503aaENSP00000494588.1
 
Nonsense mediated decay
-A0A2R8YDH3 --
DDX3X-221ENST00000630858.23181647aaENSP00000486514.1
 
Nonsense mediated decay
-A0A0D9SG12 -TSL:5
DDX3X-220ENST00000630370.23120647aaENSP00000487062.1
 
Nonsense mediated decay
-A0A0D9SG12 -TSL:5
DDX3X-206ENST00000542215.5159278aaENSP00000493687.1
 
Nonsense mediated decay
-A0A2R8Y4D2 -TSL:2
DDX3X-254ENST00000645783.1144140aaENSP00000494905.1
 
Nonsense mediated decay
-A0A2R8YF31 --
DDX3X-211ENST00000615742.448598aaENSP00000480647.1
 
Nonsense mediated decay
-A0A087WX09 -TSL:4
DDX3X-268ENST00000647373.132948aaENSP00000496076.1
 
Nonsense mediated decay
-A0A2R8YGJ1 -CDS 5' incomplete
DDX3X-213ENST00000622198.5608No protein-
 
Processed transcript
---TSL:4
DDX3X-208ENST00000611546.2570No protein-
 
Processed transcript
---TSL:5
DDX3X-207ENST00000610559.5553No protein-
 
Processed transcript
---TSL:4
DDX3X-226ENST00000642589.17473No protein-
 
Retained intron
----
DDX3X-252ENST00000645574.17284No protein-
 
Retained intron
----
DDX3X-223ENST00000642161.16724No protein-
 
Retained intron
----
DDX3X-245ENST00000644958.15817No protein-
 
Retained intron
----
DDX3X-247ENST00000645120.15651No protein-
 
Retained intron
----
DDX3X-250ENST00000645380.15617No protein-
 
Retained intron
----
DDX3X-258ENST00000646196.15493No protein-
 
Retained intron
----
DDX3X-251ENST00000645561.15340No protein-
 
Retained intron
----
DDX3X-261ENST00000646390.15141No protein-
 
Retained intron
----
DDX3X-264ENST00000646822.15071No protein-
 
Retained intron
----
DDX3X-230ENST00000642722.14989No protein-
 
Retained intron
----
DDX3X-249ENST00000645338.14698No protein-
 
Retained intron
----
DDX3X-265ENST00000646940.14649No protein-
 
Retained intron
----
DDX3X-241ENST00000644307.14605No protein-
 
Retained intron
----
DDX3X-229ENST00000642687.14508No protein-
 
Retained intron
----
DDX3X-227ENST00000642597.14327No protein-
 
Retained intron
----
DDX3X-267ENST00000647286.14257No protein-
 
Retained intron
----
DDX3X-233ENST00000642801.14116No protein-
 
Retained intron
----
DDX3X-269ENST00000647477.13377No protein-
 
Retained intron
----
DDX3X-231ENST00000642763.12940No protein-
 
Retained intron
----
DDX3X-205ENST00000480592.62333No protein-
 
Retained intron
---TSL:1
DDX3X-214ENST00000622373.12129No protein-
 
Retained intron
---TSL:NA
DDX3X-248ENST00000645253.12049No protein-
 
Retained intron
----
DDX3X-234ENST00000643820.11331No protein-
 
Retained intron
----
DDX3X-222ENST00000631641.21200No protein-
 
Retained intron
---TSL:3
DDX3X-240ENST00000644260.11059No protein-
 
Retained intron
----
DDX3X-228ENST00000642624.1710No protein-
 
Retained intron
----
DDX3X-255ENST00000646093.1530No protein-
 
Retained intron
----
DDX3X-266ENST00000647219.1522No protein-
 
Retained intron
----
Description

leukocyte specific transcript 1 [Source:HGNC Symbol;Acc:HGNC:14189]

Gene Synonyms

B144, D6S49E, LST-1

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
LST1-256ENST00000437812.5648104aaENSP00000396179.1
 
Protein coding
-O00453-11 -Ensembl CanonicalGENCODE basicTSL:1
LST1-251ENST00000427507.676497aaENSP00000416283.2
 
Protein coding
-O00453-1 -GENCODE basicTSL:1
LST1-262ENST00000451641.573466aaENSP00000406625.1
 
Protein coding
-O00453-12 -GENCODE basicTSL:1
LST1-261ENST00000450425.672666aaENSP00000415168.2
 
Protein coding
-O00453-10 -GENCODE basicTSL:2
LST1-247ENST00000417428.571297aaENSP00000394614.1
 
Protein coding
-O00453-1 -GENCODE basicTSL:3
LST1-250ENST00000426298.568928aaENSP00000415445.1
 
Protein coding
-Q5STB1 -GENCODE basicTSL:2
LST1-258ENST00000440253.566866aaENSP00000396235.1
 
Protein coding
-O00453-10 -GENCODE basicTSL:1
LST1-260ENST00000448749.566582aaENSP00000407534.1
 
Protein coding
-A0A024RCL9 -GENCODE basicTSL:5
LST1-253ENST00000429910.562459aaENSP00000399063.1
 
Protein coding
-O00453-5 -GENCODE basicTSL:3
LST1-245ENST00000413900.561928aaENSP00000399180.1
 
Protein coding
-Q5STB1 -GENCODE basicTSL:2
LST1-259ENST00000443051.561028aaENSP00000404870.1
 
Protein coding
-Q5STB1 -GENCODE basicTSL:2
LST1-263ENST00000455346.560328aaENSP00000411403.1
 
Protein coding
-Q5STB1 -GENCODE basicTSL:1
LST1-248ENST00000423871.558551aaENSP00000400069.1
 
Protein coding
-O00453-6 -GENCODE basicTSL:3
LST1-246ENST00000414266.557166aaENSP00000402707.1
 
Protein coding
-O00453-10 -GENCODE basicTSL:2
LST1-264ENST00000455493.556513aaENSP00000401650.1
 
Protein coding
-O00453-9 -GENCODE basicTSL:2
LST1-257ENST00000440242.555573aaENSP00000394815.1
 
Protein coding
-O00453-13 -GENCODE basicTSL:1
LST1-254ENST00000432164.553235aaENSP00000394834.1
 
Protein coding
-O00453-8 -GENCODE basicTSL:1
LST1-255ENST00000433420.145543aaENSP00000387723.1
 
Protein coding
-A0A0G2JHS1 -TSL:1CDS 5' incomplete
LST1-249ENST00000425495.525946aaENSP00000400339.1
 
Protein coding
-A0A0G2JIN5 -TSL:3CDS 3' incomplete
LST1-252ENST00000429792.525436aaENSP00000395821.1
 
Protein coding
-Q5HYT5 -TSL:3CDS 3' incomplete
LST1-266ENST00000483590.11834No protein-
 
Retained intron
---TSL:1
LST1-265ENST00000469244.11565No protein-
 
Retained intron
---TSL:5
LST1-267ENST00000496407.1607No protein-
 
Retained intron
---TSL:3
Description

cleavage and polyadenylation specific factor 1 [Source:MGI Symbol;Acc:MGI:2679722]

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
Cpsf1-201ENSMUST00000071898.745181441aaENSMUSP00000071794.6
 
Protein coding
CCDS27577Q9EPU4 GENCODE basicAPPRIS P1TSL:1
Cpsf1-213ENSMUST00000230157.244101450aaENSMUSP00000155308.2
 
Protein coding
-A0A2R8VK76 GENCODE basic
Cpsf1-204ENSMUST00000229287.2439121aaENSMUSP00000155746.2
 
Protein coding
-A0A2R8VI46 CDS 5' incomplete
Cpsf1-219ENSMUST00000231042.2434089aaENSMUSP00000155098.2
 
Nonsense mediated decay
-A0A2R8VK03 -
Cpsf1-203ENSMUST00000229269.21433No protein-
 
Processed transcript
---
Cpsf1-210ENSMUST00000229798.2764No protein-
 
Processed transcript
---
Cpsf1-209ENSMUST00000229797.2710No protein-
 
Processed transcript
---
Cpsf1-220ENSMUST00000231191.2646No protein-
 
Processed transcript
---
Cpsf1-216ENSMUST00000230903.22904No protein-
 
Retained intron
---
Cpsf1-211ENSMUST00000229982.21516No protein-
 
Retained intron
---
Cpsf1-215ENSMUST00000230822.21415No protein-
 
Retained intron
---
Cpsf1-217ENSMUST00000231009.21246No protein-
 
Retained intron
---
Cpsf1-218ENSMUST00000231037.2896No protein-
 
Retained intron
---
Cpsf1-205ENSMUST00000229367.2849No protein-
 
Retained intron
---
Cpsf1-206ENSMUST00000229437.2791No protein-
 
Retained intron
---
Cpsf1-212ENSMUST00000230149.2699No protein-
 
Retained intron
---
Cpsf1-202ENSMUST00000229015.2616No protein-
 
Retained intron
---
Cpsf1-207ENSMUST00000229447.2609No protein-
 
Retained intron
---
Cpsf1-208ENSMUST00000229504.2606No protein-
 
Retained intron
---
Cpsf1-214ENSMUST00000230557.2198No protein-
 
Retained intron
---
Description

cancer susceptibility 19 [Source:HGNC Symbol;Acc:HGNC:49476]

Gene Synonyms

CARLo-6, LINC01245

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSRefSeq MatchFlags
CASC19-270ENST00000641965.12329No protein-
 
Retained intron
---
CASC19-242ENST00000641584.12114No protein-
 
Retained intron
---
CASC19-278ENST00000642088.12091No protein-
 
Retained intron
---
CASC19-226ENST00000641392.21855No protein-
 
Retained intron
---
CASC19-277ENST00000642082.11545No protein-
 
Retained intron
---
CASC19-241ENST00000641582.11421No protein-
 
Retained intron
---
CASC19-236ENST00000641510.11384No protein-
 
Retained intron
---
CASC19-265ENST00000641919.11172No protein-
 
Retained intron
---
CASC19-237ENST00000641514.11074No protein-
 
Retained intron
---
CASC19-210ENST00000641073.11065No protein-
 
Retained intron
---
CASC19-219ENST00000641262.1832No protein-
 
Retained intron
---
CASC19-202ENST00000521815.2561No protein-
 
Retained intron
--TSL:3
CASC19-279ENST00000642100.1656No protein-
 
lncRNA
--Ensembl Canonical
CASC19-201ENST00000500112.25735No protein-
 
lncRNA
--GENCODE basicTSL:1
CASC19-225ENST00000641365.12219No protein-
 
lncRNA
---
CASC19-251ENST00000641701.12204No protein-
 
lncRNA
---
CASC19-204ENST00000641001.12055No protein-
 
lncRNA
--GENCODE basic
CASC19-260ENST00000641828.12001No protein-
 
lncRNA
--GENCODE basic
CASC19-284ENST00000642142.11868No protein-
 
lncRNA
--GENCODE basic
CASC19-228ENST00000641414.21701No protein-
 
lncRNA
--GENCODE basic
CASC19-261ENST00000641853.11638No protein-
 
lncRNA
--GENCODE basic
CASC19-246ENST00000641625.11606No protein-
 
lncRNA
--GENCODE basic
CASC19-238ENST00000641523.21601No protein-
 
lncRNA
--GENCODE basic
CASC19-281ENST00000642118.21559No protein-
 
lncRNA
--GENCODE basic
CASC19-243ENST00000641588.11546No protein-
 
lncRNA
--GENCODE basic
CASC19-230ENST00000641421.11530No protein-
 
lncRNA
--GENCODE basic
CASC19-218ENST00000641218.21525No protein-
 
lncRNA
--GENCODE basic
CASC19-214ENST00000641171.11493No protein-
 
lncRNA
---
CASC19-274ENST00000642018.21477No protein-
 
lncRNA
--GENCODE basic
CASC19-254ENST00000641719.11443No protein-
 
lncRNA
---
CASC19-287ENST00000664744.11431No protein-
 
lncRNA
--GENCODE basic
CASC19-206ENST00000641028.11430No protein-
 
lncRNA
---
CASC19-269ENST00000641964.11415No protein-
 
lncRNA
---
CASC19-205ENST00000641013.11411No protein-
 
lncRNA
--GENCODE basic
CASC19-221ENST00000641309.21405No protein-
 
lncRNA
--GENCODE basic
CASC19-263ENST00000641880.11404No protein-
 
lncRNA
---
CASC19-255ENST00000641733.11385No protein-
 
lncRNA
---
CASC19-229ENST00000641418.11373No protein-
 
lncRNA
--GENCODE basic
CASC19-248ENST00000641674.21365No protein-
 
lncRNA
---
CASC19-272ENST00000641991.11360No protein-
 
lncRNA
---
CASC19-280ENST00000642102.11351No protein-
 
lncRNA
--GENCODE basic
CASC19-252ENST00000641704.21336No protein-
 
lncRNA
---
CASC19-208ENST00000641056.11292No protein-
 
lncRNA
--GENCODE basic
CASC19-212ENST00000641153.21290No protein-
 
lncRNA
--GENCODE basic
CASC19-227ENST00000641411.11285No protein-
 
lncRNA
--GENCODE basic
CASC19-244ENST00000641604.11251No protein-
 
lncRNA
--GENCODE basic
CASC19-232ENST00000641480.11244No protein-
 
lncRNA
--GENCODE basic
CASC19-211ENST00000641106.21207No protein-
 
lncRNA
---
CASC19-282ENST00000642126.11206No protein-
 
lncRNA
--GENCODE basic
CASC19-264ENST00000641912.11184No protein-
 
lncRNA
--GENCODE basic
CASC19-222ENST00000641321.11173No protein-
 
lncRNA
--GENCODE basic
CASC19-234ENST00000641488.21160No protein-
 
lncRNA
---
CASC19-231ENST00000641425.11156No protein-
 
lncRNA
---
CASC19-235ENST00000641496.11154No protein-
 
lncRNA
--GENCODE basic
CASC19-224ENST00000641362.11146No protein-
 
lncRNA
---
CASC19-216ENST00000641179.11140No protein-
 
lncRNA
---
CASC19-285ENST00000657669.11127No protein-
 
lncRNA
--GENCODE basic
CASC19-267ENST00000641944.11117No protein-
 
lncRNA
---
CASC19-247ENST00000641642.11107No protein-
 
lncRNA
---
CASC19-213ENST00000641162.11091No protein-
 
lncRNA
---
CASC19-223ENST00000641357.11069No protein-
 
lncRNA
---
CASC19-240ENST00000641578.11061No protein-
 
lncRNA
---
CASC19-266ENST00000641934.11050No protein-
 
lncRNA
---
CASC19-207ENST00000641029.11047No protein-
 
lncRNA
---
CASC19-276ENST00000642077.1993No protein-
 
lncRNA
---
CASC19-220ENST00000641298.1974No protein-
 
lncRNA
---
CASC19-233ENST00000641487.1966No protein-
 
lncRNA
---
CASC19-256ENST00000641746.2960No protein-
 
lncRNA
---
CASC19-215ENST00000641174.1959No protein-
 
lncRNA
---
CASC19-273ENST00000642010.1925No protein-
 
lncRNA
---
CASC19-239ENST00000641547.1915No protein-
 
lncRNA
---
CASC19-250ENST00000641696.1886No protein-
 
lncRNA
---
CASC19-217ENST00000641187.1875No protein-
 
lncRNA
---
CASC19-249ENST00000641681.1871No protein-
 
lncRNA
---
CASC19-283ENST00000642134.1870No protein-
 
lncRNA
---
CASC19-262ENST00000641867.1866No protein-
 
lncRNA
---
CASC19-286ENST00000663628.1863No protein-
 
lncRNA
---
CASC19-258ENST00000641794.1857No protein-
 
lncRNA
---
CASC19-271ENST00000641968.1842No protein-
 
lncRNA
---
CASC19-253ENST00000641706.1818No protein-
 
lncRNA
---
CASC19-257ENST00000641786.1816No protein-
 
lncRNA
--GENCODE basic
CASC19-245ENST00000641615.1770No protein-
 
lncRNA
---
CASC19-209ENST00000641060.1679No protein-
 
lncRNA
---
CASC19-203ENST00000523510.1575No protein-
 
lncRNA
--GENCODE basicTSL:3
CASC19-268ENST00000641953.1571No protein-
 
lncRNA
---
CASC19-259ENST00000641825.1356No protein-
 
lncRNA
---
CASC19-275ENST00000642076.1165No protein-
 
lncRNA
---
Description

cysteine-rich C-terminal 1 [Source:MGI Symbol;Acc:MGI:1921425]

Gene Synonyms

2300002G24Rik, Nice-1

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
Crct1-201ENSMUST00000029521.5718102aaENSMUSP00000029521.5
 
Protein coding
CCDS17578Q6PAI5 GENCODE basicAPPRIS P1TSL:1
Crct1-202ENSMUST00000107301.2460102aaENSMUSP00000102922.2
 
Protein coding
CCDS17578Q6PAI5 GENCODE basicAPPRIS P1TSL:2
Description

long intergenic non-protein coding RNA 511 [Source:HGNC Symbol;Acc:HGNC:43564]

Gene Synonyms

onco-lncRNA-12

Location
Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSRefSeq MatchFlags
LINC00511-279ENST00000650033.13766No protein-
 
Retained intron
---
LINC00511-278ENST00000650016.1508No protein-
 
Retained intron
---
LINC00511-244ENST00000648631.12929No protein-
 
lncRNA
--Ensembl CanonicalGENCODE basic
LINC00511-220ENST00000647652.13700No protein-
 
lncRNA
--GENCODE basic
LINC00511-215ENST00000582712.22586No protein-
 
lncRNA
--GENCODE basicTSL:3
LINC00511-221ENST00000647706.22532No protein-
 
lncRNA
---
LINC00511-261ENST00000649350.12527No protein-
 
lncRNA
---
LINC00511-243ENST00000648623.22522No protein-
 
lncRNA
---
LINC00511-225ENST00000647953.12292No protein-
 
lncRNA
--GENCODE basic
LINC00511-283ENST00000650131.22282No protein-
 
lncRNA
---
LINC00511-213ENST00000581549.22266No protein-
 
lncRNA
--GENCODE basicTSL:2
LINC00511-235ENST00000648401.12214No protein-
 
lncRNA
--GENCODE basic
LINC00511-274ENST00000649793.22208No protein-
 
lncRNA
---
LINC00511-280ENST00000650051.12207No protein-
 
lncRNA
---
LINC00511-289ENST00000650212.12174No protein-
 
lncRNA
--GENCODE basic
LINC00511-276ENST00000649881.12078No protein-
 
lncRNA
---
LINC00511-294ENST00000650371.12061No protein-
 
lncRNA
---
LINC00511-272ENST00000649647.12060No protein-
 
lncRNA
---
LINC00511-302ENST00000650550.22041No protein-
 
lncRNA
--GENCODE basic
LINC00511-262ENST00000649366.12028No protein-
 
lncRNA
---
LINC00511-292ENST00000650313.11995No protein-
 
lncRNA
--GENCODE basic
LINC00511-255ENST00000649250.11978No protein-
 
lncRNA
---
LINC00511-224ENST00000647871.21958No protein-
 
lncRNA
--GENCODE basic
LINC00511-252ENST00000649074.11905No protein-
 
lncRNA
--GENCODE basic
LINC00511-249ENST00000648952.11893No protein-
 
lncRNA
---
LINC00511-299ENST00000650483.11888No protein-
 
lncRNA
---
LINC00511-240ENST00000648520.11888No protein-
 
lncRNA
--GENCODE basic
LINC00511-237ENST00000648411.11843No protein-
 
lncRNA
--GENCODE basic
LINC00511-264ENST00000649433.11836No protein-
 
lncRNA
--GENCODE basic
LINC00511-234ENST00000648297.11823No protein-
 
lncRNA
---
LINC00511-257ENST00000649311.11815No protein-
 
lncRNA
---
LINC00511-253ENST00000649172.11788No protein-
 
lncRNA
---
LINC00511-216ENST00000583460.21778No protein-
 
lncRNA
--GENCODE basicTSL:5
LINC00511-275ENST00000649833.11772No protein-
 
lncRNA
---
LINC00511-245ENST00000648667.11751No protein-
 
lncRNA
--GENCODE basic
LINC00511-273ENST00000649733.11742No protein-
 
lncRNA
---
LINC00511-205ENST00000578206.21732No protein-
 
lncRNA
--TSL:3
LINC00511-201ENST00000453722.61716No protein-
 
lncRNA
--TSL:2
LINC00511-227ENST00000648069.11713No protein-
 
lncRNA
--GENCODE basic
LINC00511-218ENST00000647593.11690No protein-
 
lncRNA
---
LINC00511-266ENST00000649489.11682No protein-
 
lncRNA
---
LINC00511-230ENST00000648176.21647No protein-
 
lncRNA
---
LINC00511-202ENST00000457958.71626No protein-
 
lncRNA
--TSL:1
LINC00511-236ENST00000648403.11556No protein-
 
lncRNA
--GENCODE basic
LINC00511-260ENST00000649343.11552No protein-
 
lncRNA
---
LINC00511-306ENST00000650602.21510No protein-
 
lncRNA
--GENCODE basic
LINC00511-233ENST00000648248.11468No protein-
 
lncRNA
---
LINC00511-296ENST00000650423.11455No protein-
 
lncRNA
---
LINC00511-241ENST00000648522.11351No protein-
 
lncRNA
---
LINC00511-281ENST00000650083.11329No protein-
 
lncRNA
---
LINC00511-229ENST00000648104.21264No protein-
 
lncRNA
---
LINC00511-270ENST00000649597.11206No protein-
 
lncRNA
---
LINC00511-298ENST00000650482.11202No protein-
 
lncRNA
---
LINC00511-265ENST00000649440.21159No protein-
 
lncRNA
---
LINC00511-290ENST00000650227.11126No protein-
 
lncRNA
---
LINC00511-271ENST00000649614.11098No protein-
 
lncRNA
---
LINC00511-267ENST00000649532.11045No protein-
 
lncRNA
---
LINC00511-263ENST00000649407.11045No protein-
 
lncRNA
---
LINC00511-226ENST00000648054.11027No protein-
 
lncRNA
---
LINC00511-288ENST00000650211.1977No protein-
 
lncRNA
---
LINC00511-286ENST00000650191.1951No protein-
 
lncRNA
---
LINC00511-254ENST00000649197.1937No protein-
 
lncRNA
--GENCODE basic
LINC00511-291ENST00000650289.2862No protein-
 
lncRNA
---
LINC00511-212ENST00000581183.3860No protein-
 
lncRNA
--TSL:3
LINC00511-295ENST00000650419.1853No protein-
 
lncRNA
---
LINC00511-246ENST00000648672.2841No protein-
 
lncRNA
---
LINC00511-297ENST00000650476.1826No protein-
 
lncRNA
---
LINC00511-268ENST00000649553.1819No protein-
 
lncRNA
---
LINC00511-277ENST00000649936.1796No protein-
 
lncRNA
---
LINC00511-284ENST00000650161.1791No protein-
 
lncRNA
---
LINC00511-256ENST00000649269.1789No protein-
 
lncRNA
---
LINC00511-238ENST00000648428.1780No protein-
 
lncRNA
---
LINC00511-219ENST00000647611.1762No protein-
 
lncRNA
---
LINC00511-287ENST00000650194.2762No protein-
 
lncRNA
---
LINC00511-214ENST00000581801.6749No protein-
 
lncRNA
--TSL:3
LINC00511-231ENST00000648203.1746No protein-
 
lncRNA
---
LINC00511-248ENST00000648907.1736No protein-
 
lncRNA
---
LINC00511-210ENST00000580861.2701No protein-
 
lncRNA
--GENCODE basicTSL:4
LINC00511-301ENST00000650510.1692No protein-
 
lncRNA
---
LINC00511-285ENST00000650180.1691No protein-
 
lncRNA
---
LINC00511-250ENST00000648954.1689No protein-
 
lncRNA
---
LINC00511-208ENST00000580199.7678No protein-
 
lncRNA
--TSL:3
LINC00511-228ENST00000648088.1669No protein-
 
lncRNA
---
LINC00511-232ENST00000648220.1668No protein-
 
lncRNA
---
LINC00511-204ENST00000577828.6656No protein-
 
lncRNA
--TSL:3
LINC00511-304ENST00000650570.1617No protein-
 
lncRNA
---
LINC00511-209ENST00000580500.5561No protein-
 
lncRNA
--TSL:4
LINC00511-203ENST00000577773.2532No protein-
 
lncRNA
--GENCODE basicTSL:3
LINC00511-303ENST00000650554.1514No protein-
 
lncRNA
---
LINC00511-259ENST00000649332.1509No protein-
 
lncRNA
---
LINC00511-247ENST00000648840.1502No protein-
 
lncRNA
---
LINC00511-222ENST00000647735.1496No protein-
 
lncRNA
--GENCODE basic
LINC00511-211ENST00000580948.1475No protein-
 
lncRNA
--TSL:3
LINC00511-269ENST00000649595.2471No protein-
 
lncRNA
---
LINC00511-206ENST00000579631.2448No protein-
 
lncRNA
--TSL:2
LINC00511-293ENST00000650357.1325No protein-
 
lncRNA
---
LINC00511-251ENST00000649013.1266No protein-
 
lncRNA
---
LINC00511-242ENST00000648559.1261No protein-
 
lncRNA
---
LINC00511-300ENST00000650499.1231No protein-
 
lncRNA
---
LINC00511-258ENST00000649330.1230No protein-
 
lncRNA
---
LINC00511-239ENST00000648500.1219No protein-
 
lncRNA
---
LINC00511-207ENST00000580175.2208No protein-
 
lncRNA
--TSL:3
LINC00511-217ENST00000584749.2173No protein-
 
lncRNA
--TSL:3
LINC00511-305ENST00000650600.1117No protein-
 
lncRNA
---
LINC00511-223ENST00000647850.1111No protein-
 
lncRNA
---
LINC00511-282ENST00000650121.1108No protein-
 
lncRNA
---
Statistics

Exons: 4, Coding exons: 0, Transcript length: 230 bps,

Version

ENST00000649330.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript-based displays

    HASH(0x2f4359c0)