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Description

VPS54 subunit of GARP complex [Source:ZFIN;Acc:ZDB-GENE-081022-176]

Gene Synonyms

zgc:195037

Location
Transcript IDNamebpProteinTranslation IDBiotypeUniProt MatchFlags
ENSDART00000170001.3vps54-20480531031aaENSDARP00000138816.3
 
Protein coding
A0A0R4IQF8 -
ENSDART00000165505.2vps54-2023235998aaENSDARP00000131039.2
 
Protein coding
A0A0R4IA59 APPRIS P1
ENSDART00000167536.2vps54-2032510799aaENSDARP00000133406.1
 
Protein coding
A0A0R4IIL8 CDS 3' incomplete
ENSDART00000161029.2vps54-2011589170aaENSDARP00000136610.1
 
Protein coding
A0A0R4IME0 CDS 5' incomplete
Description

ATRX chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]

Gene Synonyms

JMS, MRX52, RAD54, XH2, XNP

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000373344.11ATRX-201111652492aaENSP00000362441.4
 
Protein coding
CCDS14434A4LAA3 P46100 NM_000489.6MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P4TSL:1
ENST00000395603.7ATRX-202102182454aaENSP00000378967.3
 
Protein coding
CCDS14435P46100 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000675732.1ATRX-2245847858aaENSP00000502598.1
 
Protein coding
-A0A6Q8PHA4 -GENCODE basic
ENST00000624166.3ATRX-21442721351aaENSP00000485103.1
 
Protein coding
-A0A096LNL9 -TSL:1CDS 3' incomplete
ENST00000624032.3ATRX-2133071954aaENSP00000485253.1
 
Protein coding
-A0A096LNW1 -TSL:1CDS 3' incomplete
ENST00000493470.2ATRX-2072967293aaENSP00000485408.1
 
Protein coding
-A0A096LP59 -TSL:1CDS 5' incomplete
ENST00000623321.3ATRX-2111860528aaENSP00000485127.1
 
Protein coding
-A0A096LNN3 -TSL:1CDS 3' incomplete
ENST00000400866.4ATRX-203814198aaENSP00000383663.3
 
Protein coding
-H0Y3T0 -TSL:5CDS 5' incomplete
ENST00000622960.1ATRX-20862847aaENSP00000485587.1
 
Protein coding
-A0A096LPG6 -TSL:5CDS 3' incomplete
ENST00000625063.3ATRX-218593198aaENSP00000485099.1
 
Protein coding
-A0A096LNL6 -TSL:5CDS 5' and 3' incomplete
ENST00000624668.3ATRX-216583108aaENSP00000485100.1
 
Protein coding
-A0A096LNL7 -TSL:5CDS 3' incomplete
ENST00000480283.5ATRX-20610455164aaENSP00000480196.1
 
Nonsense mediated decay
-A0A087WWG0 -TSL:1
ENST00000623316.1ATRX-210803175aaENSP00000485274.1
 
Nonsense mediated decay
-A0A096LNX6 -TSL:5CDS 5' incomplete
ENST00000623242.3ATRX-20972566aaENSP00000485183.1
 
Nonsense mediated decay
-A0A096LNR8 -TSL:3CDS 5' incomplete
ENST00000635865.1ATRX-2191006aaENSP00000490150.1
 
Nonsense mediated decay
---TSL:5CDS 5' incomplete
ENST00000624193.1ATRX-215463No protein-
 
Processed transcript
---TSL:4
ENST00000637175.1ATRX-222100No protein-
 
Processed transcript
---TSL:5
ENST00000636152.1ATRX-220100No protein-
 
Processed transcript
---TSL:5
ENST00000636868.1ATRX-221100No protein-
 
Processed transcript
---TSL:5
ENST00000637959.1ATRX-22386No protein-
 
Processed transcript
---TSL:5
ENST00000623706.3ATRX-2127245No protein-
 
Retained intron
---TSL:2
ENST00000675908.1ATRX-2254653No protein-
 
Retained intron
----
ENST00000624766.1ATRX-217580No protein-
 
Retained intron
---TSL:2
ENST00000460639.2ATRX-204461No protein-
 
Retained intron
---TSL:3
ENST00000479487.1ATRX-205408No protein-
 
Retained intron
---TSL:3
Statistics

Exons: 7, Coding exons: 5, Transcript length: 803 bps, Translation length: 175 residues

Transcript Support Level (TSL)

TSL:5

Incomplete CDS

CDS 5' incomplete

Version

ENST00000623316.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript-based displays

    HASH(0x27868448)