Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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- Gene gain/loss tree
- Orthologues
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- Breeds
  - Gene tree
  - Orthologues
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Ontologies
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ID History
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Gene: VPS50 ENSSSCG00000022982

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Description

VPS50 subunit of EARP/GARPII complex [Source:VGNC Symbol;Acc:VGNC:94858]

Location

Primary_assembly 9: 73,074,906-73,217,053 forward strand.

Sscrofa11.1:CM000820.5

About this gene

This gene has 5 transcripts (splice variants) and 216 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000089131.2	VPS50-205	5621	984aa	ENSSSCP00000062713.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TYZ3 A0A5G2QKW5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000037283.3	VPS50-204	5567	966aa	ENSSSCP00000051016.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B427 A0A8D1JNN6	-
ENSSSCT00000032573.4	VPS50-201	5436	934aa	ENSSSCP00000020880.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TZ28 I3LA14	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000052640.2	VPS50-202	3361	909aa	ENSSSCP00000044665.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AL77 A0A8D0RUC7	-
ENSSSCT00000025363.4	VPS50-203	2755	704aa	ENSSSCP00000024453.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1U4F9 I3LK39	-

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Summary

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