Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Lgals9 ENSRNOG00000012681

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Description

galectin 9 [Source:RGD Symbol;Acc:3005]

Gene Synonyms

UAT, gal-9

Location

Primary_assembly 10: 63,907,018-63,930,045 reverse strand.

mRatBN7.2:CM026983.1

About this gene

This gene has 6 transcripts (splice variants), 263 orthologues, 10 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000017042.9	Lgals9-201	1544	354aa	ENSRNOP00000017042.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V7N8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000093529.2	Lgals9-205	1508	342aa	ENSRNOP00000076090.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1W2Q608	-
ENSRNOT00000017071.8	Lgals9-202	1454	322aa	ENSRNOP00000017071.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P7Q6	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000093232.2	Lgals9-203	1412	310aa	ENSRNOP00000076199.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1W2Q6B5	-
ENSRNOT00000093244.2	Lgals9-204	1367	211aa	ENSRNOP00000076231.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1W2Q6D2	-
ENSRNOT00000107069.1	Lgals9-206	897	160aa	ENSRNOP00000079075.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G4S4	-

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Summary

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