Mouse PWK/PhJ assembly and gene annotation

Assembly

Gene annotation

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

Assembly	PWK_PhJ_v1, INSDC Assembly GCA_001624775.1, Apr 2016
Base Pairs	2,559,971,091
Golden Path Length	2,559,971,091
Annotation provider	UCSC computational genomics laboratory
Annotation method	External annotation import
Genebuild started	Jul 2016
Genebuild released	Oct 2016
Genebuild last updated/patched	Jan 2018
Database version	111.1

Gene counts

Gene/transcipt that contains an open reading frame (ORF).Coding genes	20,179
Non coding genes	10,776
Small non coding genes	4,414
Long non coding genes	5,816
Misc non coding genes	546
A gene that has homology to known protein-coding genes but contain a frameshift and/or stop codon(s) which disrupts the ORF. Thought to have arisen through duplication followed by loss of function.Pseudogenes	5,739
A transcript is the operational unit of a gene. In a genomic context, transcripts consist of one or more exons, with adjoining exons being separated by introns. The exons/introns are transcribed and then the introns spliced out. Transcripts may or may not encode a proteinGene transcripts	101,394

Other

Genscan gene predictions

48,489

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