Mouse (GRCm39)
Description

U2 small nuclear RNA auxiliary factor 1-like 4 [Source:MGI Symbol;Acc:MGI:2678374]

Gene Synonyms

U2af26, auxiliary factor 26

Location
About this transcript

This transcript has 8 exons, is annotated with 24 domains and features, is associated with 610 variant alleles and maps to 214 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000043273.16U2af1l4-201884220aaENSMUSP00000039406.10
 
Protein coding
CCDS21100Q8BGJ9 Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENSMUST00000167361.8U2af1l4-221860122aaENSMUSP00000146834.2
 
Protein coding
A0A140LII6 GENCODE basicTSL:2
ENSMUST00000166510.8U2af1l4-216835210aaENSMUSP00000132316.2
 
Protein coding
E9Q1I7 GENCODE basicTSL:5
ENSMUST00000163654.8U2af1l4-206781188aaENSMUSP00000131048.2
 
Protein coding
Q8BGJ9-2 GENCODE basicTSL:2
ENSMUST00000166960.8U2af1l4-21874790aaENSMUSP00000146831.2
 
Protein coding
A0A140LII3 GENCODE basicTSL:3
ENSMUST00000163482.8U2af1l4-20566855aaENSMUSP00000130649.2
 
Protein coding
E9Q5D0 GENCODE basicTSL:5
ENSMUST00000163464.8U2af1l4-204651216aaENSMUSP00000125959.2
 
Protein coding
E9Q5J3 GENCODE basicTSL:5
ENSMUST00000163330.3U2af1l4-203583105aaENSMUSP00000129385.3
 
Protein coding
E9PWA1 TSL:3CDS 3' incomplete
ENSMUST00000171850.8U2af1l4-234564187aaENSMUSP00000131781.2
 
Protein coding
E9PUZ3 GENCODE basicTSL:5
ENSMUST00000166257.8U2af1l4-215546181aaENSMUSP00000125838.2
 
Protein coding
E9Q5Y2 GENCODE basicTSL:5
ENSMUST00000168931.8U2af1l4-227405119aaENSMUSP00000129697.2
 
Protein coding
E9Q3S9 TSL:3CDS 3' incomplete
ENSMUST00000167202.8U2af1l4-220399120aaENSMUSP00000146344.2
 
Protein coding
A0A140LHB1 TSL:3CDS 3' incomplete
ENSMUST00000168555.8U2af1l4-22688337aaENSMUSP00000131654.2
 
Nonsense mediated decay
E9PWX6 TSL:3
ENSMUST00000168333.8U2af1l4-225590102aaENSMUSP00000128950.2
 
Nonsense mediated decay
E9Q809 TSL:5
ENSMUST00000165722.2U2af1l4-21357253aaENSMUSP00000125790.2
 
Nonsense mediated decay
F7D8X7 TSL:5CDS 5' incomplete
ENSMUST00000168229.8U2af1l4-22456646aaENSMUSP00000132915.2
 
Nonsense mediated decay
E9PWM2 TSL:5
ENSMUST00000167501.8U2af1l4-22250537aaENSMUSP00000129102.2
 
Nonsense mediated decay
E9PWX6 TSL:3
ENSMUST00000163276.8U2af1l4-20250237aaENSMUSP00000127233.2
 
Nonsense mediated decay
E9PWX6 TSL:5
ENSMUST00000164365.8U2af1l4-20850024aaENSMUSP00000131193.2
 
Nonsense mediated decay
F7A6Z4 TSL:5CDS 5' incomplete
ENSMUST00000163848.8U2af1l4-20743937aaENSMUSP00000132536.2
 
Nonsense mediated decay
E9PWX6 TSL:5
ENSMUST00000166864.8U2af1l4-217353No protein-
 
Protein coding CDS not defined
-TSL:5
ENSMUST00000165773.8U2af1l4-214874No protein-
 
Retained intron
-TSL:2
ENSMUST00000169283.8U2af1l4-229728No protein-
 
Retained intron
-TSL:2
ENSMUST00000168222.8U2af1l4-223715No protein-
 
Retained intron
-TSL:5
ENSMUST00000169911.8U2af1l4-230656No protein-
 
Retained intron
-TSL:2
ENSMUST00000164438.8U2af1l4-209635No protein-
 
Retained intron
-TSL:2
ENSMUST00000169071.8U2af1l4-228629No protein-
 
Retained intron
-TSL:2
ENSMUST00000165009.2U2af1l4-210626No protein-
 
Retained intron
-TSL:5
ENSMUST00000165524.9U2af1l4-211582No protein-
 
Retained intron
-TSL:5
ENSMUST00000169962.2U2af1l4-231568No protein-
 
Retained intron
-TSL:2
ENSMUST00000167024.2U2af1l4-219562No protein-
 
Retained intron
-TSL:2
ENSMUST00000165543.8U2af1l4-212519No protein-
 
Retained intron
-TSL:2
ENSMUST00000170453.2U2af1l4-232410No protein-
 
Retained intron
-TSL:3
ENSMUST00000171364.2U2af1l4-233202No protein-
 
Retained intron
-TSL:5
Statistics

Exons: 8, Coding exons: 8, Transcript length: 884 bps, Translation length: 220 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BGJ9

CCDS

This transcript is a member of the Mouse CCDS set: CCDS21100

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000043273.16

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.