Mouse (GRCm39)
Description

synaptopodin [Source:MGI Symbol;Acc:MGI:1099446]

Gene Synonyms

9030217H17Rik, 9330140I15Rik

Location
About this transcript

This transcript has 3 exons, is annotated with 26 domains and features, is associated with 1864 variant alleles and maps to 211 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000130360.2Synpo-20651591100aaENSMUSP00000115355.2
 
Protein coding
E9Q3E2 Ensembl CanonicalGENCODE basicAPPRIS P2TSL:1
ENSMUST00000097566.10Synpo-2015060901aaENSMUSP00000095174.4
 
Protein coding
CCDS37833Q8CC35-2 GENCODE basicAPPRIS ALT2TSL:1
ENSMUST00000143275.3Synpo-2095040929aaENSMUSP00000125272.2
 
Protein coding
Q8CC35 GENCODE basicAPPRIS ALT2TSL:5
ENSMUST00000130044.2Synpo-2054970901aaENSMUSP00000121756.2
 
Protein coding
CCDS37833Q8CC35-2 GENCODE basicAPPRIS ALT2TSL:2
ENSMUST00000115318.4Synpo-2024479690aaENSMUSP00000110973.4
 
Protein coding
CCDS50298Q8CC35-3 GENCODE basicAPPRIS ALT2TSL:1
ENSMUST00000155195.3Synpo-2114442690aaENSMUSP00000117897.3
 
Protein coding
CCDS50298Q8CC35-3 GENCODE basicAPPRIS ALT2TSL:1
ENSMUST00000123288.2Synpo-20347715aaENSMUSP00000124122.2
 
Protein coding
E0CYK1 TSL:3CDS 3' incomplete
ENSMUST00000128528.3Synpo-2042601No protein-
 
Protein coding CDS not defined
-TSL:1
ENSMUST00000137894.2Synpo-2071926No protein-
 
Protein coding CDS not defined
-TSL:1
ENSMUST00000154857.2Synpo-210642No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000160395.2Synpo-212418No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000139236.2Synpo-208214No protein-
 
Protein coding CDS not defined
-TSL:5
Statistics

Exons: 3, Coding exons: 2, Transcript length: 5,060 bps, Translation length: 901 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8CC35

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37833

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000097566.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.