Transcript: ENSMUST00000199942.5 Lgi2-202

Description

leucine-rich repeat LGI family, member 2 [Source:MGI Symbol;Acc:MGI:2180196]

Location

Chromosome 5: 52,690,859-52,723,645 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 28 domains and features, is associated with 2340 variant alleles and maps to 254 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000039252.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000039750.7	Lgi2-201	6456	550aa	ENSMUSP00000040436.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19285	Q8K4Z0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000199942.5	Lgi2-202	6273	542aa	ENSMUSP00000143707.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS80281	Q8K4Z0-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 6,273 bps, Translation length: 542 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8K4Z0

CCDS

This transcript is a member of the Mouse CCDS set: CCDS80281

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000199942.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000199942.5 Lgi2-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000199942.5 Lgi2-202

Summary

About Us

Get help

Our sister sites

Follow us