Mouse (GRCm39)
Description

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:MGI Symbol;Acc:MGI:1338032]

Gene Synonyms

Sema Y, Semay

Location
About this transcript

This transcript has 19 exons, is annotated with 1 domain and feature, is associated with 1070 variant alleles and maps to 338 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000090823.8Sema6c-2024029963aaENSMUSP00000088333.2
 
Protein coding
CCDS71289E9Q613 Ensembl CanonicalGENCODE basicAPPRIS P4TSL:1
ENSMUST00000090821.10Sema6c-2013933931aaENSMUSP00000088331.4
 
Protein coding
CCDS17604Q9WTM3 GENCODE basicAPPRIS ALT2TSL:5
ENSMUST00000107217.6Sema6c-2033595923aaENSMUSP00000102835.2
 
Protein coding
G5E8N4 GENCODE basicTSL:1
ENSMUST00000168321.8Sema6c-2133553963aaENSMUSP00000129081.3
 
Protein coding
CCDS71289E9Q613 GENCODE basicAPPRIS P4TSL:1
ENSMUST00000202315.3Sema6c-2142843931aaENSMUSP00000144039.2
 
Protein coding
CCDS17604Q9WTM3 GENCODE basicAPPRIS ALT2TSL:1
ENSMUST00000131742.8Sema6c-20854929aaENSMUSP00000142525.2
 
Protein coding
A0A0G2JDV7 TSL:2CDS 3' incomplete
ENSMUST00000142449.9Sema6c-2123936124aaENSMUSP00000123457.3
 
Nonsense mediated decay
E9Q4N1 TSL:1
ENSMUST00000204709.3Sema6c-2153562124aaENSMUSP00000144702.2
 
Nonsense mediated decay
E9Q4N1 TSL:1
ENSMUST00000131620.8Sema6c-20771680aaENSMUSP00000138154.2
 
Nonsense mediated decay
S4R1B4 TSL:5
ENSMUST00000130662.2Sema6c-205890No protein-
 
Protein coding CDS not defined
-TSL:2
ENSMUST00000142306.2Sema6c-211450No protein-
 
Protein coding CDS not defined
-TSL:2
ENSMUST00000130814.8Sema6c-206347No protein-
 
Protein coding CDS not defined
-TSL:2
ENSMUST00000134125.8Sema6c-2095095No protein-
 
Retained intron
-TSL:2
ENSMUST00000126597.2Sema6c-204814No protein-
 
Retained intron
-TSL:3
ENSMUST00000141607.8Sema6c-210788No protein-
 
Retained intron
-TSL:3
Statistics

Exons: 19, Coding exons: 4, Transcript length: 3,562 bps, Translation length: 124 residues

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000204709.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.