Mouse (GRCm39)
Description

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F [Source:MGI Symbol;Acc:MGI:1096347]

Gene Synonyms

Sema IV, Semak

About this transcript

This transcript has 18 exons, is annotated with 23 domains and features, is associated with 1343 variant alleles and maps to 242 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000192727.6Sema3f-2042383785aaENSMUSP00000141865.2
 
Protein coding
CCDS81069O88632 Ensembl CanonicalGENCODE basicTSL:1
ENSMUST00000080560.9Sema3f-2013395754aaENSMUSP00000079400.4
 
Protein coding
CCDS23505O88632-2 GENCODE basicAPPRIS P1TSL:1
ENSMUST00000192783.6Sema3f-205906284aaENSMUSP00000141668.2
 
Protein coding
A0A0A6YWS0 TSL:3CDS 5' incomplete
ENSMUST00000193108.6Sema3f-206685191aaENSMUSP00000141878.2
 
Protein coding
A0A0A6YX80 TSL:5CDS 3' incomplete
ENSMUST00000195023.3Sema3f-211443148aaENSMUSP00000141350.2
 
Protein coding
A0A0A6YW11 TSL:3CDS 5' and 3' incomplete
ENSMUST00000194039.6Sema3f-2082972185aaENSMUSP00000142221.2
 
Nonsense mediated decay
A0A0A6YY06 TSL:1
ENSMUST00000194424.6Sema3f-209711116aaENSMUSP00000142178.2
 
Nonsense mediated decay
A0A0A6YXX2 TSL:3CDS 5' incomplete
ENSMUST00000193665.6Sema3f-2071034No protein-
 
Protein coding CDS not defined
-TSL:5
ENSMUST00000195267.6Sema3f-2121084No protein-
 
Retained intron
-TSL:3
ENSMUST00000194846.2Sema3f-210695No protein-
 
Retained intron
-TSL:3
ENSMUST00000192712.2Sema3f-203581No protein-
 
Retained intron
-TSL:3
ENSMUST00000192157.2Sema3f-202376No protein-
 
Retained intron
-TSL:3
Statistics

Exons: 18, Coding exons: 18, Transcript length: 2,383 bps, Translation length: 785 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O88632

CCDS

This transcript is a member of the Mouse CCDS set: CCDS81069

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000192727.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.