Mouse (GRCm39)
Description

collagen, type IV, alpha 1 [Source:MGI Symbol;Acc:MGI:88454]

Gene Synonyms

Bru, Col4a-1, Del(8)44H, Del(8)Bru44H, Raw, Svc, alpha1(IV) collagen

Location
About this transcript

This transcript has 52 exons, is annotated with 69 domains and features, is associated with 6315 variant alleles and maps to 538 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000033898.10Col4a1-20166151669aaENSMUSP00000033898.10
 
Protein coding
CCDS40219P02463 Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENSMUST00000209598.2Col4a1-2061170328aaENSMUSP00000147459.2
 
Protein coding
A0A1B0GRC0 TSL:5CDS 5' incomplete
ENSMUST00000208095.2Col4a1-203545133aaENSMUSP00000146554.2
 
Protein coding
A0A140LHU8 TSL:3CDS 3' incomplete
ENSMUST00000209735.2Col4a1-20864871562aaENSMUSP00000147951.2
 
Nonsense mediated decay
A0A1B0GSI7 TSL:2
ENSMUST00000209661.2Col4a1-207618126aaENSMUSP00000148226.2
 
Nonsense mediated decay
A0A1B0GT69 TSL:5CDS 5' incomplete
ENSMUST00000208386.2Col4a1-204416No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000130488.3Col4a1-202676No protein-
 
Retained intron
-TSL:5
ENSMUST00000209000.2Col4a1-205604No protein-
 
Retained intron
-TSL:NA
Statistics

Exons: 52, Coding exons: 52, Transcript length: 6,615 bps, Translation length: 1,669 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P02463

CCDS

This transcript is a member of the Mouse CCDS set: CCDS40219

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000033898.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.