Transcript: ENSMUST00000075040.9 Dusp13a-201

Description

dual specificity phosphatase 13A [Source:NCBI gene (formerly Entrezgene);Acc:128932648]

Gene Synonyms

Dusp13

Location

Chromosome 14: 21,783,463-21,798,690 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 20 domains and features, is associated with 1375 variant alleles and maps to 194 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000121906.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000075040.9	Dusp13a-201	1745	188aa	ENSMUSP00000074553.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36821	Q6B8I0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000153071.8	Dusp13a-203	505	55aa	ENSMUSP00000139140.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		V9GXG6	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000127051.4	Dusp13a-202	641	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 8, Coding exons: 3, Transcript length: 1,745 bps, Translation length: 188 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6B8I0

CCDS

This transcript is a member of the Mouse CCDS set: CCDS36821

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000075040.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000075040.9 Dusp13a-201

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Transcript: ENSMUST00000075040.9 Dusp13a-201

Summary

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