Mouse (GRCm39)
Description

regulatory factor X, 5 (influences HLA class II expression) [Source:MGI Symbol;Acc:MGI:1858421]

Location
About this transcript

This transcript has 10 exons, is annotated with 23 domains and features, is associated with 752 variant alleles and maps to 262 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000137088.8Rfx5-2074333658aaENSMUSP00000117963.2
 
Protein coding
CCDS17598Q9JL61 Ensembl CanonicalGENCODE basicAPPRIS P1TSL:5
ENSMUST00000107254.8Rfx5-2034450303aaENSMUSP00000102875.2
 
Protein coding
Q6DI69 GENCODE basicTSL:1
ENSMUST00000107253.8Rfx5-2024367303aaENSMUSP00000102874.2
 
Protein coding
Q6DI69 GENCODE basicTSL:1
ENSMUST00000029772.3Rfx5-2014189658aaENSMUSP00000029772.3
 
Protein coding
CCDS17598Q9JL61 GENCODE basicAPPRIS P1TSL:1
ENSMUST00000107260.9Rfx5-2052355658aaENSMUSP00000102881.3
 
Protein coding
CCDS17598Q9JL61 GENCODE basicAPPRIS P1TSL:5
ENSMUST00000107255.8Rfx5-2042350658aaENSMUSP00000102876.2
 
Protein coding
CCDS17598Q9JL61 GENCODE basicAPPRIS P1TSL:5
ENSMUST00000147237.8Rfx5-215882181aaENSMUSP00000118586.2
 
Protein coding
D3Z0D4 TSL:5CDS 3' incomplete
ENSMUST00000145031.8Rfx5-213565105aaENSMUSP00000118099.2
 
Protein coding
D3YZK7 TSL:5CDS 3' incomplete
ENSMUST00000152869.8Rfx5-21753890aaENSMUSP00000121157.2
 
Protein coding
D3YTK4 TSL:5CDS 3' incomplete
ENSMUST00000132393.8Rfx5-20653695aaENSMUSP00000117999.2
 
Protein coding
D3YVW1 TSL:5CDS 3' incomplete
ENSMUST00000142311.8Rfx5-210486131aaENSMUSP00000119704.2
 
Protein coding
K4DI79 TSL:3CDS 3' incomplete
ENSMUST00000144132.8Rfx5-212401441aaENSMUSP00000114908.2
 
Nonsense mediated decay
D6RDE5 TSL:1
ENSMUST00000140331.8Rfx5-20970541aaENSMUSP00000118014.2
 
Nonsense mediated decay
D6RDE5 TSL:3
ENSMUST00000145472.8Rfx5-21452541aaENSMUSP00000116675.2
 
Nonsense mediated decay
D6RDE5 TSL:5
ENSMUST00000140294.8Rfx5-208346No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000148803.8Rfx5-2164139No protein-
 
Retained intron
-TSL:2
ENSMUST00000142708.2Rfx5-211680No protein-
 
Retained intron
-TSL:5
Statistics

Exons: 10, Coding exons: 9, Transcript length: 4,333 bps, Translation length: 658 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9JL61

CCDS

This transcript is a member of the Mouse CCDS set: CCDS17598

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000137088.8

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.