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Description

tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]

Gene Synonyms

TM2, Tm3, Tpm-1, alpha-TM

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
Tpm1-209ENSMUST00000113690.82890245aaENSMUSP00000109320.2
 
Protein coding
CCDS52842G5E8R0 GENCODE basicTSL:3
Tpm1-216ENSMUST00000113707.91898284aaENSMUSP00000109337.3
 
Protein coding
CCDS23311P58771-2 GENCODE basicAPPRIS P3TSL:1
Tpm1-215ENSMUST00000113705.81759284aaENSMUSP00000109335.2
 
Protein coding
CCDS52848B7ZNL3 GENCODE basicTSL:1
Tpm1-213ENSMUST00000113697.81742284aaENSMUSP00000109327.2
 
Protein coding
CCDS52846E9Q450 GENCODE basicTSL:2
Tpm1-212ENSMUST00000113696.81714248aaENSMUSP00000109326.2
 
Protein coding
CCDS52843G5E8R2 GENCODE basicTSL:2
Tpm1-211ENSMUST00000113695.81607248aaENSMUSP00000109325.2
 
Protein coding
CCDS52841G5E8R1 GENCODE basicTSL:3
Tpm1-203ENSMUST00000050905.161259284aaENSMUSP00000051888.10
 
Protein coding
CCDS52847Q8BP43 GENCODE basicAPPRIS ALT1TSL:1
Tpm1-205ENSMUST00000113685.101208284aaENSMUSP00000109315.4
 
Protein coding
CCDS52845P58771-1 GENCODE basicAPPRIS ALT1TSL:1
Tpm1-210ENSMUST00000113693.81054281aaENSMUSP00000109323.2
 
Protein coding
CCDS52844E9Q452 GENCODE basicTSL:5
Tpm1-202ENSMUST00000034928.121824326aaENSMUSP00000034928.5
 
Protein coding
-F8WID5 GENCODE basicTSL:5
Tpm1-201ENSMUST00000030185.51797284aaENSMUSP00000030185.5
 
Protein coding
-Q8BSH3 GENCODE basicAPPRIS ALT1TSL:2
Tpm1-214ENSMUST00000113701.81677284aaENSMUSP00000109331.2
 
Protein coding
-E9Q448 GENCODE basicTSL:5
Tpm1-206ENSMUST00000113686.8998251aaENSMUSP00000109316.2
 
Protein coding
-E9Q455 GENCODE basicTSL:5
Tpm1-207ENSMUST00000113687.8962287aaENSMUSP00000109317.2
 
Protein coding
-E9Q454 GENCODE basicTSL:5
Tpm1-208ENSMUST00000113689.8904245aaENSMUSP00000109319.2
 
Protein coding
-E9Q453 GENCODE basicTSL:5
Tpm1-204ENSMUST00000113684.8887248aaENSMUSP00000109314.2
 
Protein coding
-E9Q456 GENCODE basicTSL:5
Tpm1-218ENSMUST00000129733.81544157aaENSMUSP00000138784.2
 
Nonsense mediated decay
-S4R2U0 TSL:5
Tpm1-220ENSMUST00000139046.8141949aaENSMUSP00000138514.2
 
Nonsense mediated decay
-S4R261 TSL:5
Tpm1-221ENSMUST00000156899.21274No protein-
 
Processed transcript
--TSL:1
Tpm1-219ENSMUST00000131279.2649No protein-
 
Processed transcript
--TSL:2
Tpm1-217ENSMUST00000129466.81123No protein-
 
Retained intron
--TSL:2
Description

LIM zinc finger domain containing 2 [Source:HGNC Symbol;Acc:HGNC:16084]

Gene Synonyms

PINCH-2, PINCH2

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
LIMS2-202ENST00000355119.92387341aaENSP00000347240.4
 
Protein coding
CCDS54395Q7Z4I7-1 NM_001161403.3MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS ALT1TSL:1
LIMS2-205ENST00000409455.52500336aaENSP00000386383.1
 
Protein coding
CCDS54394Q7Z4I7-3 -GENCODE basicAPPRIS P4TSL:1
LIMS2-208ENST00000410011.52335336aaENSP00000387002.1
 
Protein coding
CCDS54394Q7Z4I7-3 -GENCODE basicAPPRIS P4TSL:1
LIMS2-207ENST00000409808.62315336aaENSP00000386637.2
 
Protein coding
CCDS54394Q7Z4I7-3 -GENCODE basicAPPRIS P4TSL:5
LIMS2-201ENST00000324938.92111365aaENSP00000326888.5
 
Protein coding
CCDS2147Q7Z4I7-2 -GENCODE basicTSL:1
LIMS2-217ENST00000545738.61730363aaENSP00000443794.2
 
Protein coding
CCDS54396Q7Z4I7-5 -GENCODE basicTSL:5
LIMS2-209ENST00000410038.51695189aaENSP00000386570.1
 
Protein coding
CCDS58725Q7Z4I7-4 -GENCODE basicTSL:2
LIMS2-204ENST00000409286.51678189aaENSP00000386252.1
 
Protein coding
CCDS58725Q7Z4I7-4 -GENCODE basicTSL:2
LIMS2-206ENST00000409754.51620189aaENSP00000386345.1
 
Protein coding
CCDS58725Q7Z4I7-4 -GENCODE basicTSL:1
LIMS2-203ENST00000409254.1867189aaENSP00000386907.1
 
Protein coding
CCDS58725Q7Z4I7-4 -GENCODE basicTSL:3
LIMS2-211ENST00000426981.51409169aaENSP00000397253.1
 
Protein coding
-H0Y592 -TSL:3CDS 5' incomplete
LIMS2-210ENST00000413578.593060aaENSP00000388611.1
 
Nonsense mediated decay
-F8WEF3 -TSL:3
LIMS2-216ENST00000494613.51137No protein-
 
Processed transcript
---TSL:2
LIMS2-218ENST00000582671.1531No protein-
 
Processed transcript
---TSL:4
LIMS2-213ENST00000469300.64807No protein-
 
Retained intron
---TSL:2
LIMS2-212ENST00000466410.52592No protein-
 
Retained intron
---TSL:2
LIMS2-214ENST00000476932.52269No protein-
 
Retained intron
---TSL:2
LIMS2-215ENST00000484252.52099No protein-
 
Retained intron
---TSL:2
Description

RNA binding fox-1 homolog 3 [Source:HGNC Symbol;Acc:HGNC:27097]

Gene Synonyms

FOX-3, HRNBP3, NeuN

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
RBFOX3-203ENST00000580155.51519312aaENSP00000463653.1
 
Protein coding
CCDS45805A6NFN3-1 -Ensembl CanonicalGENCODE basicAPPRIS P2TSL:2
RBFOX3-211ENST00000583458.52934358aaENSP00000464186.1
 
Protein coding
-J3QRF4 -GENCODE basicAPPRIS ALT2TSL:5
RBFOX3-213ENST00000648001.12461314aaENSP00000497797.1
 
Protein coding
-A0A3B3ITL7 -CDS 5' incomplete
RBFOX3-212ENST00000584778.51547325aaENSP00000462007.1
 
Protein coding
-A6NFN3-2 -GENCODE basicAPPRIS ALT2TSL:5
RBFOX3-206ENST00000582043.51143328aaENSP00000463964.1
 
Protein coding
-J3QQZ2 -GENCODE basicTSL:5
RBFOX3-209ENST00000582880.687775aaENSP00000465367.1
 
Protein coding
-K7EJX6 -TSL:3CDS 5' incomplete
RBFOX3-210ENST00000582894.5611131aaENSP00000468693.1
 
Protein coding
-K7ESF7 -TSL:3CDS 5' incomplete
RBFOX3-204ENST00000580508.126052aaENSP00000467872.1
 
Protein coding
-K7EQK7 -TSL:2CDS 3' incomplete
RBFOX3-207ENST00000582139.11544aaENSP00000464946.1
 
Protein coding
---TSL:3CDS 3' incomplete
RBFOX3-201ENST00000578887.12694No protein-
 
Processed transcript
---TSL:2
RBFOX3-208ENST00000582344.1321No protein-
 
Processed transcript
---TSL:3
RBFOX3-202ENST00000578998.13072No protein-
 
Retained intron
---TSL:2
RBFOX3-205ENST00000581393.51201No protein-
 
Retained intron
---TSL:2
Description

CUGBP, Elav-like family member 2 [Source:MGI Symbol;Acc:MGI:1338822]

Gene Synonyms

B230345P09Rik, Cugbp2, ETR-3, Napor-2

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
Celf2-214ENSMUST00000170438.88856478aaENSMUSP00000130829.2
 
Protein coding
CCDS50493E9QA47 GENCODE basicTSL:5
Celf2-204ENSMUST00000114924.108738526aaENSMUSP00000110574.4
 
Protein coding
CCDS50494Q9Z0H4-9 GENCODE basicAPPRIS P4TSL:1
Celf2-201ENSMUST00000002176.137718484aaENSMUSP00000002176.6
 
Protein coding
CCDS50491Q9Z0H4-7 GENCODE basicAPPRIS ALT1TSL:1
Celf2-202ENSMUST00000100429.117491484aaENSMUSP00000097996.5
 
Protein coding
CCDS50491Q9Z0H4-7 GENCODE basicAPPRIS ALT1TSL:5
Celf2-206ENSMUST00000114934.115470526aaENSMUSP00000110584.4
 
Protein coding
CCDS50494Q9Z0H4-9 GENCODE basicAPPRIS P4TSL:1
Celf2-226ENSMUST00000183209.83852472aaENSMUSP00000138355.2
 
Protein coding
CCDS59632S4R1S7 GENCODE basicTSL:1
Celf2-221ENSMUST00000182706.82525520aaENSMUSP00000138764.2
 
Protein coding
CCDS59633Q9Z0H4-2 GENCODE basicAPPRIS ALT1TSL:1
Celf2-211ENSMUST00000142941.82338490aaENSMUSP00000120459.3
 
Protein coding
CCDS50492Q9Z0H4-4 GENCODE basicAPPRIS ALT1TSL:5
Celf2-213ENSMUST00000150624.92332488aaENSMUSP00000138297.2
 
Protein coding
CCDS84468Q9Z0H4-5 GENCODE basicAPPRIS ALT1TSL:1
Celf2-224ENSMUST00000182879.82223440aaENSMUSP00000138359.2
 
Protein coding
CCDS79729A0A0R4J2B0 GENCODE basicTSL:1
Celf2-205ENSMUST00000114927.91721488aaENSMUSP00000110577.2
 
Protein coding
CCDS84468Q9Z0H4-5 GENCODE basicAPPRIS ALT1TSL:5
Celf2-223ENSMUST00000182851.83587508aaENSMUSP00000138363.2
 
Protein coding
-Q9Z0H4-1 GENCODE basicTSL:1
Celf2-225ENSMUST00000183091.82177460aaENSMUSP00000138795.2
 
Protein coding
-S4R2U7 GENCODE basicTSL:5
Celf2-217ENSMUST00000182404.81024276aaENSMUSP00000138769.2
 
Protein coding
-S4R2S7 TSL:5CDS 3' incomplete
Celf2-209ENSMUST00000137733.9630134aaENSMUSP00000138694.2
 
Protein coding
-S4R2L5 TSL:3CDS 3' incomplete
Celf2-203ENSMUST00000114923.3529159aaENSMUSP00000110573.3
 
Protein coding
-A3KGT0 GENCODE basicTSL:3
Celf2-207ENSMUST00000123142.340292aaENSMUSP00000138666.2
 
Protein coding
-S4R2J2 TSL:5CDS 3' incomplete
Celf2-220ENSMUST00000182657.233146aaENSMUSP00000138785.2
 
Protein coding
-S4R2U1 TSL:1CDS 3' incomplete
Celf2-228ENSMUST00000183984.81996443aaENSMUSP00000138974.2
 
Nonsense mediated decay
-V9GX43 TSL:5CDS 5' incomplete
Celf2-222ENSMUST00000182749.21967No protein-
 
Processed transcript
--TSL:5
Celf2-216ENSMUST00000182355.21240No protein-
 
Processed transcript
--TSL:1
Celf2-210ENSMUST00000138347.9923No protein-
 
Processed transcript
--TSL:5
Celf2-215ENSMUST00000182037.2769No protein-
 
Processed transcript
--TSL:3
Celf2-212ENSMUST00000148321.9405No protein-
 
Processed transcript
--TSL:5
Celf2-219ENSMUST00000182560.84802No protein-
 
Retained intron
--TSL:2
Celf2-227ENSMUST00000183269.84798No protein-
 
Retained intron
--TSL:2
Celf2-218ENSMUST00000182523.24143No protein-
 
Retained intron
--TSL:2
Celf2-208ENSMUST00000126742.22075No protein-
 
Retained intron
--TSL:2
Statistics

Exons: 15, Coding exons: 14, Transcript length: 2,525 bps, Translation length: 520 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS59633

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Z0H4

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000182706.8

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays

    HASH(0x24a34dc8)