RIKEN cDNA A630089N07 gene [Source:MGI Symbol;Acc:MGI:2444323]
Chromosome 16: 97,802,510-97,883,650 reverse strand.
GRCm39:CM001009.3
This gene has 6 transcripts (splice variants), 19 orthologues and 110 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| ENSMUST00000231741.2 | A630089N07Rik-202 | 1556 | 439aa | ENSMUSP00000156068.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A338P6Q3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENSMUST00000231268.2 | A630089N07Rik-201 | 2142 | 117aa | ENSMUSP00000156011.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A338P6J1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, | |
| ENSMUST00000232346.2 | A630089N07Rik-203 | 804 | 68aa | ENSMUSP00000156036.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8BXW1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENSMUST00000232533.2 | A630089N07Rik-205 | 654 | 118aa | ENSMUSP00000155945.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A338P6D3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, | |
| ENSMUST00000232376.2 | A630089N07Rik-204 | 524 | 67aa | ENSMUSP00000156146.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A338P6W5 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENSMUST00000232614.2 | A630089N07Rik-206 | 497 | No protein | - | Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined | - | - |
