Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Apol8 ENSMUSG00000056656

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Description

apolipoprotein L 8 [Source:MGI Symbol;Acc:MGI:2444921]

Gene Synonyms

9830006J20Rik, Apol2

Location

Chromosome 15: 77,631,998-77,641,203 reverse strand.

GRCm39:CM001008.3

About this gene

This gene has 5 transcripts (splice variants), 473 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000070911.4	Apol8-201	2801	339aa	ENSMUSP00000064237.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56989	A2VDH7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000089450.5	Apol8-202	2697	339aa	ENSMUSP00000086873.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56989	A2VDH7	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000229445.2	Apol8-204	352	78aa	ENSMUSP00000155102.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHH5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000229332.2	Apol8-203	342	25aa	ENSMUSP00000155474.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHV6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000230332.2	Apol8-205	394	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

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Summary

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