Description
hepatocellular carcinoma up-regulated long non-coding RNA [Source:HGNC Symbol;Acc:HGNC:34232]
Gene Synonyms
HCCAT1, LINC00078, NCRNA00078
Location
Chromosome 6: 8,435,663-9,227,098 forward strand.
About this transcript
This transcript has 11 exons, is associated with 341772 variant alleles and maps to 266 oligo probes.
Gene
This transcript is a product of gene ENSG00000285219.4 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | RefSeq Match | Flags |
|---|---|---|---|---|---|---|---|---|
| ENST00000645747.1 | HULC-270 | 1783 | No protein | - | lncRNA | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000642357.1 | HULC-207 | 3568 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000644837.1 | HULC-255 | 3529 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000646231.1 | HULC-284 | 3469 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000643788.1 | HULC-236 | 3387 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000645474.1 | HULC-266 | 3341 | No protein | - | lncRNA | - | - | |
| ENST00000643985.1 | HULC-241 | 3302 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000645379.1 | HULC-264 | 3277 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000646996.1 | HULC-305 | 3163 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000643058.1 | HULC-218 | 3147 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000643136.1 | HULC-221 | 3133 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000643126.1 | HULC-220 | 3014 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000643036.1 | HULC-217 | 2976 | No protein | - | lncRNA | - | - | |
| ENST00000645365.1 | HULC-263 | 2976 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000642163.1 | HULC-203 | 2936 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000646490.1 | HULC-292 | 2925 | No protein | - | lncRNA | - | - | |
| ENST00000645344.1 | HULC-262 | 2883 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000646431.1 | HULC-290 | 2882 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000647365.1 | HULC-312 | 2851 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000645047.1 | HULC-258 | 2843 | No protein | - | lncRNA | - | - | |
| ENST00000645808.1 | HULC-274 | 2836 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000644654.1 | HULC-252 | 2821 | No protein | - | lncRNA | - | - | |
| ENST00000645464.1 | HULC-265 | 2806 | No protein | - | lncRNA | - | - | |
| ENST00000645976.1 | HULC-280 | 2805 | No protein | - | lncRNA | - | - | |
| ENST00000645486.1 | HULC-267 | 2793 | No protein | - | lncRNA | - | - | |
| ENST00000643545.1 | HULC-232 | 2777 | No protein | - | lncRNA | - | - | |
| ENST00000646792.1 | HULC-301 | 2638 | No protein | - | lncRNA | - | - | |
| ENST00000646295.1 | HULC-286 | 2635 | No protein | - | lncRNA | - | - | |
| ENST00000646718.1 | HULC-295 | 2611 | No protein | - | lncRNA | - | - | |
| ENST00000644248.1 | HULC-246 | 2604 | No protein | - | lncRNA | - | - | |
| ENST00000645611.1 | HULC-268 | 2563 | No protein | - | lncRNA | - | - | |
| ENST00000643473.1 | HULC-230 | 2543 | No protein | - | lncRNA | - | - | |
| ENST00000646007.1 | HULC-281 | 2528 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000644778.1 | HULC-253 | 2466 | No protein | - | lncRNA | - | - | |
| ENST00000642534.1 | HULC-209 | 2463 | No protein | - | lncRNA | - | - | |
| ENST00000646521.1 | HULC-293 | 2415 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000646876.1 | HULC-303 | 2369 | No protein | - | lncRNA | - | - | |
| ENST00000642760.1 | HULC-213 | 2257 | No protein | - | lncRNA | - | - | |
| ENST00000646073.1 | HULC-283 | 2225 | No protein | - | lncRNA | - | - | |
| ENST00000647156.1 | HULC-309 | 2218 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000701974.1 | HULC-322 | 2160 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000642798.1 | HULC-214 | 2151 | No protein | - | lncRNA | - | - | |
| ENST00000644363.1 | HULC-247 | 2079 | No protein | - | lncRNA | - | - | |
| ENST00000645322.1 | HULC-261 | 2060 | No protein | - | lncRNA | - | - | |
| ENST00000642666.2 | HULC-212 | 2016 | No protein | - | lncRNA | - | - | |
| ENST00000643311.1 | HULC-225 | 1856 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000644892.1 | HULC-256 | 1844 | No protein | - | lncRNA | - | - | |
| ENST00000643761.1 | HULC-235 | 1831 | No protein | - | lncRNA | - | - | |
| ENST00000644070.1 | HULC-243 | 1727 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000645796.1 | HULC-273 | 1714 | No protein | - | lncRNA | - | - | |
| ENST00000645087.1 | HULC-259 | 1694 | No protein | - | lncRNA | - | - | |
| ENST00000644213.2 | HULC-245 | 1686 | No protein | - | lncRNA | - | - | |
| ENST00000642859.1 | HULC-215 | 1641 | No protein | - | lncRNA | - | - | |
| ENST00000702170.1 | HULC-325 | 1630 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000644038.1 | HULC-242 | 1623 | No protein | - | lncRNA | - | - | |
| ENST00000643259.1 | HULC-224 | 1599 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000645715.1 | HULC-269 | 1596 | No protein | - | lncRNA | - | - | |
| ENST00000642622.1 | HULC-210 | 1569 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000647466.1 | HULC-313 | 1556 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000643141.1 | HULC-222 | 1547 | No protein | - | lncRNA | - | - | |
| ENST00000646706.1 | HULC-294 | 1542 | No protein | - | lncRNA | - | - | |
| ENST00000642458.1 | HULC-208 | 1528 | No protein | - | lncRNA | - | - | |
| ENST00000645820.1 | HULC-275 | 1505 | No protein | - | lncRNA | - | - | |
| ENST00000643635.1 | HULC-234 | 1490 | No protein | - | lncRNA | - | - | |
| ENST00000643526.1 | HULC-231 | 1458 | No protein | - | lncRNA | - | - | |
| ENST00000643571.1 | HULC-233 | 1457 | No protein | - | lncRNA | - | - | |
| ENST00000646403.1 | HULC-288 | 1429 | No protein | - | lncRNA | - | - | |
| ENST00000702251.1 | HULC-326 | 1428 | No protein | - | lncRNA | - | - | |
| ENST00000701034.1 | HULC-318 | 1426 | No protein | - | lncRNA | - | - | |
| ENST00000702052.1 | HULC-323 | 1424 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000643938.1 | HULC-239 | 1412 | No protein | - | lncRNA | - | - | |
| ENST00000644364.1 | HULC-248 | 1396 | No protein | - | lncRNA | - | - | |
| ENST00000646488.1 | HULC-291 | 1368 | No protein | - | lncRNA | - | - | |
| ENST00000646749.1 | HULC-297 | 1339 | No protein | - | lncRNA | - | - | |
| ENST00000645758.1 | HULC-272 | 1337 | No protein | - | lncRNA | - | - | |
| ENST00000701010.1 | HULC-317 | 1334 | No protein | - | lncRNA | - | - | |
| ENST00000645940.1 | HULC-278 | 1330 | No protein | - | lncRNA | - | - | |
| ENST00000645970.1 | HULC-279 | 1317 | No protein | - | lncRNA | - | - | |
| ENST00000643404.1 | HULC-226 | 1296 | No protein | - | lncRNA | - | - | |
| ENST00000647175.1 | HULC-310 | 1288 | No protein | - | lncRNA | - | - | |
| ENST00000645017.1 | HULC-257 | 1286 | No protein | - | lncRNA | - | - | |
| ENST00000645925.1 | HULC-277 | 1281 | No protein | - | lncRNA | - | - | |
| ENST00000644610.1 | HULC-251 | 1274 | No protein | - | lncRNA | - | - | |
| ENST00000642345.1 | HULC-206 | 1274 | No protein | - | lncRNA | - | - | |
| ENST00000647306.1 | HULC-311 | 1269 | No protein | - | lncRNA | - | - | |
| ENST00000643414.1 | HULC-227 | 1252 | No protein | - | lncRNA | - | - | |
| ENST00000644111.1 | HULC-244 | 1238 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000644441.1 | HULC-249 | 1226 | No protein | - | lncRNA | - | - | |
| ENST00000647039.1 | HULC-306 | 1218 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000647052.1 | HULC-307 | 1214 | No protein | - | lncRNA | - | - | |
| ENST00000643431.1 | HULC-229 | 1208 | No protein | - | lncRNA | - | - | |
| ENST00000644800.1 | HULC-254 | 1205 | No protein | - | lncRNA | - | - | |
| ENST00000645750.1 | HULC-271 | 1204 | No protein | - | lncRNA | - | - | |
| ENST00000647135.1 | HULC-308 | 1196 | No protein | - | lncRNA | - | - | |
| ENST00000643415.1 | HULC-228 | 1191 | No protein | - | lncRNA | - | - | |
| ENST00000643083.1 | HULC-219 | 1184 | No protein | - | lncRNA | - | - | |
| ENST00000645321.1 | HULC-260 | 1171 | No protein | - | lncRNA | - | - | |
| ENST00000646406.1 | HULC-289 | 1167 | No protein | - | lncRNA | - | - | |
| ENST00000665267.1 | HULC-314 | 1161 | No protein | - | lncRNA | - | - | |
| ENST00000643953.1 | HULC-240 | 1150 | No protein | - | lncRNA | - | - | |
| ENST00000646868.1 | HULC-302 | 1145 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000646741.1 | HULC-296 | 1145 | No protein | - | lncRNA | - | - | |
| ENST00000642340.1 | HULC-205 | 1127 | No protein | - | lncRNA | - | - | |
| ENST00000701376.1 | HULC-321 | 1108 | No protein | - | lncRNA | - | - | |
| ENST00000702144.1 | HULC-324 | 1107 | No protein | - | lncRNA | - | - | |
| ENST00000642665.1 | HULC-211 | 1103 | No protein | - | lncRNA | - | - | |
| ENST00000642877.1 | HULC-216 | 1077 | No protein | - | lncRNA | - | - | |
| ENST00000645863.1 | HULC-276 | 1069 | No protein | - | lncRNA | - | - | |
| ENST00000642168.1 | HULC-204 | 1055 | No protein | - | lncRNA | - | - | |
| ENST00000643201.1 | HULC-223 | 979 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000646043.1 | HULC-282 | 958 | No protein | - | lncRNA | - | - | |
| ENST00000693633.1 | HULC-316 | 958 | No protein | - | lncRNA | - | - | |
| ENST00000646981.1 | HULC-304 | 948 | No protein | - | lncRNA | - | - | |
| ENST00000503668.2 | HULC-202 | 947 | No protein | - | lncRNA | - | TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, | |
| ENST00000702332.1 | HULC-327 | 936 | No protein | - | lncRNA | - | - | |
| ENST00000643889.1 | HULC-238 | 919 | No protein | - | lncRNA | - | - | |
| ENST00000701356.1 | HULC-320 | 906 | No protein | - | lncRNA | - | - | |
| ENST00000644605.1 | HULC-250 | 896 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000643832.1 | HULC-237 | 890 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000701300.1 | HULC-319 | 881 | No protein | - | lncRNA | - | - | |
| ENST00000646774.1 | HULC-299 | 782 | No protein | - | lncRNA | - | - | |
| ENST00000646758.1 | HULC-298 | 734 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000646377.1 | HULC-287 | 696 | No protein | - | lncRNA | - | - | |
| ENST00000665625.1 | HULC-315 | 664 | No protein | - | lncRNA | - | - | |
| ENST00000429060.2 | HULC-201 | 612 | No protein | - | lncRNA | - | TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, | |
| ENST00000646784.1 | HULC-300 | 581 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000646294.1 | HULC-285 | 561 | No protein | - | lncRNA | - | - |