Transcript: ENST00000638350.1 VPS53-274

Description

VPS53 subunit of GARP complex [Source:HGNC Symbol;Acc:HGNC:25608]

Gene Synonyms

FLJ10979, HCCS1

Location

Scaffold HG2285_HG106_HG2252_PATCH: 91,795-274,320 reverse strand.

About this transcript

This transcript has 18 exons, is annotated with 8 domains and features and maps to 616 oligo probes.

Gene

This transcript is a product of gene ENSG00000283883.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000639801.2	VPS53-285	13089	832aa	ENSP00000492761.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5VIR6-4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000638350.1	VPS53-274	2656	670aa	ENSP00000492070.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5VIR6-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000639896.1	VPS53-286	2356	699aa	ENSP00000492119.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5VIR6-1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000640337.1	VPS53-290	1269	422aa	ENSP00000491498.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000639574.1	VPS53-282	729	237aa	ENSP00000492845.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000639488.1	VPS53-281	613	68aa	ENSP00000490995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000640127.1	VPS53-288	585	145aa	ENSP00000492430.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000638884.1	VPS53-276	3204	216aa	ENSP00000492603.1	Nonsense mediated decay	-	-	-
ENST00000639641.1	VPS53-283	1903	547aa	ENSP00000492696.1	Nonsense mediated decay	-	-	-
ENST00000638912.1	VPS53-277	2444	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000638197.1	VPS53-273	744	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000639944.1	VPS53-287	575	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000638530.1	VPS53-275	570	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000639449.1	VPS53-280	561	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000640863.1	VPS53-291	494	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000639376.1	VPS53-279	2781	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000639795.1	VPS53-284	1972	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000640193.1	VPS53-289	732	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000640902.1	VPS53-292	683	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000639231.1	VPS53-278	366	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 2,656 bps, Translation length: 670 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5VIR6

Version

ENST00000638350.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000638350.1 VPS53-274

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Transcript: ENST00000638350.1 VPS53-274

Summary

About Us

Get help

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