Transcript: ENST00000637218.2 CIROP-201

Description

ciliated left-right organizer metallopeptidase [Source:HGNC Symbol;Acc:HGNC:53647]

Gene Synonyms

LMLN2

Location

Chromosome 14: 23,099,062-23,104,989 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 17 domains and features, is associated with 2784 variant alleles and maps to 236 oligo probes.

Gene

This transcript is a product of gene ENSG00000283654.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000637218.2	CIROP-201	2656	788aa	ENSP00000489869.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS86373	A0A1B0GTW7-1	NM_001354640.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000644000.1	CIROP-203	2193	730aa	ENSP00000493582.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1B0GTW7-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000642668.1	CIROP-202	2009	614aa	ENSP00000495729.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8Y752	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000644147.1	CIROP-204	2480	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 2,656 bps, Translation length: 788 residues

MANE

This MANE Select transcript contains ENSP00000489869 and matches to NM_001354640.2 and NP_001341569.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: A0A1B0GTW7

CCDS

This transcript is a member of the Human CCDS set: CCDS86373

Transcript Support Level (TSL)

TSL:5

Version

ENST00000637218.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000637218.2 CIROP-201

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Transcript: ENST00000637218.2 CIROP-201

Summary

About Us

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