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EnsemblEnsembl Home
Description

nuclear paraspeckle assembly transcript 1 [Source:HGNC Symbol;Acc:HGNC:30815]

Gene Synonyms

LINC00084, MENepsilon/beta, NCRNA00084, TncRNA, VINC

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSRefSeq MatchFlags
ENST00000501122.2NEAT1-20222743No protein-
 
lncRNA
--Ensembl CanonicalGENCODE basicTSL:NA
ENST00000687132.1NEAT1-2113736No protein-
 
lncRNA
---
ENST00000685861.1NEAT1-2103732No protein-
 
lncRNA
---
ENST00000601801.3NEAT1-2033524No protein-
 
lncRNA
--GENCODE basicTSL:4
ENST00000499732.3NEAT1-2013441No protein-
 
lncRNA
--GENCODE basicTSL:2
ENST00000670617.1NEAT1-2093301No protein-
 
lncRNA
---
ENST00000645023.1NEAT1-2073300No protein-
 
lncRNA
--GENCODE basic
ENST00000646243.1NEAT1-2082994No protein-
 
lncRNA
--GENCODE basic
ENST00000687943.1NEAT1-2121204No protein-
 
lncRNA
---
ENST00000642367.1NEAT1-2061145No protein-
 
lncRNA
--GENCODE basic
ENST00000693290.1NEAT1-2141116No protein-
 
lncRNA
---
ENST00000612303.2NEAT1-2041053No protein-
 
lncRNA
--GENCODE basicTSL:3
ENST00000691530.1NEAT1-213683No protein-
 
lncRNA
---
ENST00000693747.1NEAT1-215683No protein-
 
lncRNA
---
ENST00000616315.2NEAT1-205512No protein-
 
lncRNA
--GENCODE basicTSL:2
Description

Rho guanine nucleotide exchange factor 10 [Source:HGNC Symbol;Acc:HGNC:14103]

Gene Synonyms

Gef10, KIAA0294

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000349830.8ARHGEF10-20156481344aaENSP00000340297.3
 
Protein coding
CCDS34794O15013-5 NM_014629.4MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P3TSL:1
ENST00000518288.5ARHGEF10-20556481368aaENSP00000431012.1
 
Protein coding
CCDS78296O15013-6 -GENCODE basicTSL:1
ENST00000520359.5ARHGEF10-20754721306aaENSP00000427909.1
 
Protein coding
CCDS78297O15013-7 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000398564.5ARHGEF10-20454801369aaENSP00000381571.1
 
Protein coding
-O15013-1 -GENCODE basicAPPRIS ALT2TSL:5
ENST00000522435.5ARHGEF10-2104343988aaENSP00000427768.1
 
Protein coding
-H0YAN8 -TSL:1CDS 5' incomplete
ENST00000398560.2ARHGEF10-2032221380aaENSP00000381568.2
 
Protein coding
-E9PB39 -GENCODE basicTSL:1
ENST00000521927.1ARHGEF10-209814No protein-
 
Processed transcript
---TSL:5
ENST00000382795.7ARHGEF10-202581No protein-
 
Processed transcript
---TSL:5
ENST00000523596.5ARHGEF10-212559No protein-
 
Processed transcript
---TSL:4
ENST00000524212.1ARHGEF10-215538No protein-
 
Processed transcript
---TSL:4
ENST00000523711.5ARHGEF10-2133468No protein-
 
Retained intron
---TSL:1
ENST00000522969.1ARHGEF10-2112349No protein-
 
Retained intron
---TSL:1
ENST00000520972.5ARHGEF10-2082176No protein-
 
Retained intron
---TSL:5
ENST00000523980.1ARHGEF10-214557No protein-
 
Retained intron
---TSL:4
ENST00000519641.1ARHGEF10-206501No protein-
 
Retained intron
---TSL:3
Description

exportin 1 [Source:HGNC Symbol;Acc:HGNC:12825]

Gene Synonyms

CRM-1, CRM1, emb

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000401558.7XPO1-20149881071aaENSP00000384863.2
 
Protein coding
CCDS33205O14980 NM_003400.4MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000676667.1XPO1-22058011071aaENSP00000503809.1
 
Protein coding
CCDS33205O14980 -GENCODE basicAPPRIS P1
ENST00000677239.1XPO1-23147761071aaENSP00000504087.1
 
Protein coding
CCDS33205O14980 -GENCODE basicAPPRIS P1
ENST00000677933.1XPO1-24346961071aaENSP00000503482.1
 
Protein coding
CCDS33205O14980 -GENCODE basicAPPRIS P1
ENST00000678182.1XPO1-24746931071aaENSP00000504594.1
 
Protein coding
CCDS33205O14980 -GENCODE basicAPPRIS P1
ENST00000677150.1XPO1-22846411071aaENSP00000503167.1
 
Protein coding
CCDS33205O14980 -GENCODE basicAPPRIS P1
ENST00000678790.1XPO1-25246101071aaENSP00000503419.1
 
Protein coding
CCDS33205O14980 -GENCODE basicAPPRIS P1
ENST00000676553.1XPO1-21946031071aaENSP00000504247.1
 
Protein coding
CCDS33205O14980 -GENCODE basicAPPRIS P1
ENST00000677928.1XPO1-24245941071aaENSP00000504198.1
 
Protein coding
CCDS33205O14980 -GENCODE basicAPPRIS P1
ENST00000677813.1XPO1-23945491071aaENSP00000504543.1
 
Protein coding
CCDS33205O14980 -GENCODE basicAPPRIS P1
ENST00000677814.1XPO1-24045001071aaENSP00000504848.1
 
Protein coding
CCDS33205O14980 -GENCODE basicAPPRIS P1
ENST00000677417.1XPO1-23444521071aaENSP00000503572.1
 
Protein coding
CCDS33205O14980 -GENCODE basicAPPRIS P1
ENST00000404992.6XPO1-20241051071aaENSP00000385942.2
 
Protein coding
CCDS33205O14980 -GENCODE basicAPPRIS P1TSL:2
ENST00000406957.5XPO1-20334791071aaENSP00000385559.1
 
Protein coding
CCDS33205O14980 -GENCODE basicAPPRIS P1TSL:1
ENST00000677476.1XPO1-2364613904aaENSP00000503789.1
 
Protein coding
-A0A7I2V488 -GENCODE basic
ENST00000676771.1XPO1-22144401056aaENSP00000503808.1
 
Protein coding
-A0A7I2V461 -GENCODE basic
ENST00000678081.1XPO1-24444371026aaENSP00000503194.1
 
Protein coding
-A0A7I2V2Y6 -GENCODE basic
ENST00000677556.1XPO1-2374390940aaENSP00000504749.1
 
Protein coding
-A0A7I2V6B9 -GENCODE basic
ENST00000677803.1XPO1-2384370999aaENSP00000503702.1
 
Protein coding
-A0A7I2V3W6 -GENCODE basic
ENST00000676999.1XPO1-22642991026aaENSP00000502940.1
 
Protein coding
-A0A7I2V2Y6 -GENCODE basic
ENST00000678877.1XPO1-2534239979aaENSP00000502889.1
 
Protein coding
-A0A7I2V2H0 -GENCODE basic
ENST00000676889.1XPO1-2254215952aaENSP00000503075.1
 
Protein coding
-A0A7I2V2S3 -GENCODE basic
ENST00000676789.1XPO1-22441841007aaENSP00000504617.1
 
Protein coding
-A0A7I2YQV4 -GENCODE basic
ENST00000677850.1XPO1-2413132677aaENSP00000504771.1
 
Protein coding
-A0A7I2YQX3 -GENCODE basic
ENST00000451765.6XPO1-2082424451aaENSP00000413853.2
 
Protein coding
-C9JKM9 -GENCODE basicTSL:3
ENST00000449444.5XPO1-20757962aaENSP00000406819.1
 
Protein coding
-C9IYM2 -TSL:4CDS 3' incomplete
ENST00000443240.5XPO1-206565132aaENSP00000406428.1
 
Protein coding
-C9J673 -TSL:4CDS 3' incomplete
ENST00000428210.5XPO1-205677682aaENSP00000407170.1
 
Nonsense mediated decay
-F8WF71 -TSL:2
ENST00000679035.1XPO1-2544772115aaENSP00000502854.1
 
Nonsense mediated decay
-A0A7I2V2C5 --
ENST00000678360.1XPO1-2494733688aaENSP00000503638.1
 
Nonsense mediated decay
-A0A7I2V4A3 --
ENST00000676783.1XPO1-223466055aaENSP00000503342.1
 
Nonsense mediated decay
-A0A7I2V396 --
ENST00000678172.1XPO1-2464511735aaENSP00000503554.1
 
Nonsense mediated decay
-A0A7I2V3N0 --
ENST00000680228.1XPO1-2554417136aaENSP00000505574.1
 
Nonsense mediated decay
----
ENST00000677422.1XPO1-2354291115aaENSP00000503474.1
 
Nonsense mediated decay
-A0A7I2V3J1 --
ENST00000678263.1XPO1-2484273115aaENSP00000504172.1
 
Nonsense mediated decay
-A0A7I2YQP1 --
ENST00000677289.1XPO1-232423665aaENSP00000504286.1
 
Nonsense mediated decay
-A0A7I2V531 -CDS 5' incomplete
ENST00000678741.1XPO1-2514155941aaENSP00000503395.1
 
Nonsense mediated decay
-A0A7I2V3P3 --
ENST00000420673.6XPO1-2043297No protein-
 
Processed transcript
---TSL:2
ENST00000468259.1XPO1-211600No protein-
 
Processed transcript
---TSL:5
ENST00000476585.5XPO1-214342No protein-
 
Processed transcript
---TSL:2
ENST00000678113.1XPO1-2458930No protein-
 
Retained intron
----
ENST00000677110.1XPO1-2276571No protein-
 
Retained intron
----
ENST00000677290.1XPO1-2335834No protein-
 
Retained intron
----
ENST00000677190.1XPO1-2305126No protein-
 
Retained intron
----
ENST00000481073.6XPO1-2154344No protein-
 
Retained intron
---TSL:2
ENST00000676778.1XPO1-2224270No protein-
 
Retained intron
----
ENST00000677157.1XPO1-2294020No protein-
 
Retained intron
----
ENST00000492182.6XPO1-2173879No protein-
 
Retained intron
---TSL:2
ENST00000469337.2XPO1-2123602No protein-
 
Retained intron
---TSL:4
ENST00000678640.1XPO1-2502998No protein-
 
Retained intron
----
ENST00000461407.5XPO1-2102676No protein-
 
Retained intron
---TSL:2
ENST00000481214.1XPO1-216720No protein-
 
Retained intron
---TSL:2
ENST00000460037.1XPO1-209573No protein-
 
Retained intron
---TSL:4
ENST00000495003.1XPO1-218568No protein-
 
Retained intron
---TSL:2
ENST00000475744.1XPO1-213249No protein-
 
Retained intron
---TSL:2
Description

tropomyosin 1 [Source:HGNC Symbol;Acc:HGNC:12010]

Gene Synonyms

C15orf13, CMH3

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000403994.9TPM1-2071217284aaENSP00000385107.4
 
Protein coding
CCDS45273P09493-1 NM_001018005.2MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS ALT1TSL:1
ENST00000358278.7TPM1-2061717284aaENSP00000351022.3
 
Protein coding
CCDS32263P09493-3 -GENCODE basicTSL:1
ENST00000267996.11TPM1-2011670284aaENSP00000267996.7
 
Protein coding
CCDS32262P09493-7 -GENCODE basicTSL:1
ENST00000334895.10TPM1-2041564245aaENSP00000334624.4
 
Protein coding
CCDS32264P09493-5 -GENCODE basicTSL:1
ENST00000288398.10TPM1-2021295284aaENSP00000288398.6
 
Protein coding
CCDS10181P09493-10 -GENCODE basicAPPRIS P3TSL:1
ENST00000317516.12TPM1-2031160245aaENSP00000322577.7
 
Protein coding
CCDS81891F5H7S3 -GENCODE basicTSL:1
ENST00000561266.6TPM1-2291100284aaENSP00000453955.2
 
Protein coding
CCDS86459P09493-6 -GENCODE basicAPPRIS ALT1TSL:3
ENST00000559556.5TPM1-220977284aaENSP00000453941.1
 
Protein coding
CCDS58369P09493-9 -GENCODE basicAPPRIS ALT1TSL:2
ENST00000404484.9TPM1-208943248aaENSP00000384315.4
 
Protein coding
CCDS81892H7BYY1 -GENCODE basicTSL:1
ENST00000559281.6TPM1-218941248aaENSP00000452658.1
 
Protein coding
CCDS81894H0YK48 -GENCODE basicTSL:5
ENST00000559397.6TPM1-219933284aaENSP00000452879.1
 
Protein coding
CCDS58368P09493-8 -GENCODE basicTSL:2
ENST00000610733.1TPM1-2323957106aaENSP00000477929.1
 
Protein coding
-A0A087WTJ7 -GENCODE basicTSL:2
ENST00000651577.1TPM1-2352010155aaENSP00000498730.1
 
Protein coding
-A0A494C0V8 -GENCODE basic
ENST00000558910.3TPM1-2161968248aaENSP00000452830.2
 
Protein coding
-H0YKJ4 -GENCODE basicTSL:2
ENST00000357980.9TPM1-2051807326aaENSP00000350667.4
 
Protein coding
-Q6ZN40 -GENCODE basicTSL:2
ENST00000651704.1TPM1-2381780155aaENSP00000498562.1
 
Protein coding
-A0A494C0V8 -GENCODE basic
ENST00000560970.6TPM1-2261097284aaENSP00000453062.2
 
Protein coding
-A0A0S2Z4G6 -GENCODE basicAPPRIS ALT1TSL:1
ENST00000560959.5TPM1-225925275aaENSP00000453724.1
 
Protein coding
-B7Z596 -GENCODE basicTSL:2
ENST00000560615.5TPM1-223570108aaENSP00000453050.1
 
Protein coding
-H0YL42 -TSL:3CDS 3' incomplete
ENST00000558347.5TPM1-2121525157aaENSP00000452887.1
 
Nonsense mediated decay
-H0YKP3 -TSL:5
ENST00000558544.5TPM1-214139949aaENSP00000453817.1
 
Nonsense mediated decay
-H0YN06 -TSL:5
ENST00000651590.1TPM1-2361382251aaENSP00000498284.1
 
Nonsense mediated decay
-A0A494BZZ2 --
ENST00000651622.1TPM1-237116362aaENSP00000498540.1
 
Nonsense mediated decay
-A0A494C0I0 -CDS 5' incomplete
ENST00000561395.5TPM1-23067368aaENSP00000453092.1
 
Nonsense mediated decay
-H0YL80 -TSL:5CDS 5' incomplete
ENST00000561425.5TPM1-23158240aaENSP00000453324.1
 
Nonsense mediated decay
-H0YLS7 -TSL:5
ENST00000559831.5TPM1-221573142aaENSP00000452977.1
 
Nonsense mediated decay
-H0YKX5 -TSL:5CDS 5' incomplete
ENST00000560679.1TPM1-224292No protein-
 
Processed transcript
---TSL:3
ENST00000651344.1TPM1-2343316No protein-
 
Retained intron
----
ENST00000560975.5TPM1-2272855No protein-
 
Retained intron
---TSL:5
ENST00000644204.1TPM1-2332704No protein-
 
Retained intron
----
ENST00000558264.5TPM1-2102687No protein-
 
Retained intron
---TSL:2
ENST00000558314.5TPM1-2111031No protein-
 
Retained intron
---TSL:1
ENST00000561242.1TPM1-228673No protein-
 
Retained intron
---TSL:2
ENST00000558400.1TPM1-213658No protein-
 
Retained intron
---TSL:2
ENST00000558868.5TPM1-215653No protein-
 
Retained intron
---TSL:2
ENST00000560131.1TPM1-222537No protein-
 
Retained intron
---TSL:2
ENST00000558072.5TPM1-209525No protein-
 
Retained intron
---TSL:2
ENST00000559108.1TPM1-217437No protein-
 
Retained intron
---TSL:2
Description

small nucleolar RNA host gene 1 [Source:HGNC Symbol;Acc:HGNC:32688]

Gene Synonyms

LINC00057, NCRNA00057, UHG, lncRNA16

Location
Gene
Transcript IDNamebpProteinTranslation IDBiotypeCCDSRefSeq MatchFlags
ENST00000665371.1SNHG1-2453294No protein-
 
Retained intron
---
ENST00000535076.6SNHG1-2012812No protein-
 
Retained intron
--TSL:2
ENST00000537965.6SNHG1-2072772No protein-
 
Retained intron
--TSL:5
ENST00000538654.6SNHG1-2092769No protein-
 
Retained intron
--TSL:2
ENST00000661616.1SNHG1-2372336No protein-
 
Retained intron
---
ENST00000535689.6SNHG1-2022173No protein-
 
Retained intron
--TSL:2
ENST00000541416.6SNHG1-2162078No protein-
 
Retained intron
--TSL:2
ENST00000537024.6SNHG1-2031727No protein-
 
Retained intron
--TSL:5
ENST00000544550.6SNHG1-2201689No protein-
 
Retained intron
--TSL:2
ENST00000540865.5SNHG1-214784No protein-
 
Retained intron
--TSL:5
ENST00000545308.5SNHG1-222646No protein-
 
Retained intron
--TSL:2
ENST00000545688.5SNHG1-224610No protein-
 
Retained intron
--TSL:3
ENST00000540904.1SNHG1-215594No protein-
 
Retained intron
--TSL:5
ENST00000689147.1SNHG1-2661162No protein-
 
lncRNA
--Ensembl Canonical
ENST00000656268.1SNHG1-2313771No protein-
 
lncRNA
---
ENST00000545920.2SNHG1-2253527No protein-
 
lncRNA
--TSL:2
ENST00000660960.1SNHG1-2363500No protein-
 
lncRNA
---
ENST00000655919.1SNHG1-2283489No protein-
 
lncRNA
---
ENST00000668309.1SNHG1-2493302No protein-
 
lncRNA
--GENCODE basic
ENST00000664307.1SNHG1-2443228No protein-
 
lncRNA
---
ENST00000663237.1SNHG1-2423119No protein-
 
lncRNA
---
ENST00000665512.1SNHG1-2463065No protein-
 
lncRNA
---
ENST00000652879.1SNHG1-2262982No protein-
 
lncRNA
---
ENST00000671236.1SNHG1-2542843No protein-
 
lncRNA
---
ENST00000670729.1SNHG1-2532763No protein-
 
lncRNA
---
ENST00000662400.1SNHG1-2402560No protein-
 
lncRNA
---
ENST00000670469.1SNHG1-2512470No protein-
 
lncRNA
---
ENST00000656240.1SNHG1-2292456No protein-
 
lncRNA
---
ENST00000661936.1SNHG1-2382345No protein-
 
lncRNA
---
ENST00000662229.1SNHG1-2392309No protein-
 
lncRNA
---
ENST00000656589.1SNHG1-2322152No protein-
 
lncRNA
---
ENST00000544983.2SNHG1-2211968No protein-
 
lncRNA
--TSL:2
ENST00000660730.1SNHG1-2351944No protein-
 
lncRNA
--GENCODE basic
ENST00000656241.1SNHG1-2301828No protein-
 
lncRNA
---
ENST00000660547.1SNHG1-2341785No protein-
 
lncRNA
---
ENST00000667655.1SNHG1-2471782No protein-
 
lncRNA
---
ENST00000670502.1SNHG1-2521752No protein-
 
lncRNA
--GENCODE basic
ENST00000692454.1SNHG1-2721735No protein-
 
lncRNA
--GENCODE basic
ENST00000691324.1SNHG1-2711551No protein-
 
lncRNA
---
ENST00000658540.1SNHG1-2331513No protein-
 
lncRNA
---
ENST00000537925.5SNHG1-2061487No protein-
 
lncRNA
--TSL:1
ENST00000653690.1SNHG1-2271438No protein-
 
lncRNA
---
ENST00000540725.6SNHG1-2131394No protein-
 
lncRNA
--TSL:1
ENST00000663092.1SNHG1-2411320No protein-
 
lncRNA
---
ENST00000688102.1SNHG1-2651300No protein-
 
lncRNA
---
ENST00000687029.1SNHG1-2631282No protein-
 
lncRNA
---
ENST00000663967.1SNHG1-2431202No protein-
 
lncRNA
---
ENST00000668048.1SNHG1-2481158No protein-
 
lncRNA
---
ENST00000686478.1SNHG1-2591147No protein-
 
lncRNA
---
ENST00000686670.1SNHG1-2611132No protein-
 
lncRNA
---
ENST00000670323.1SNHG1-2501112No protein-
 
lncRNA
---
ENST00000539921.7SNHG1-2111105No protein-
 
lncRNA
--TSL:2
ENST00000685229.1SNHG1-2551100No protein-
 
lncRNA
---
ENST00000692887.1SNHG1-2731092No protein-
 
lncRNA
---
ENST00000685577.1SNHG1-2561089No protein-
 
lncRNA
---
ENST00000686500.1SNHG1-2601073No protein-
 
lncRNA
---
ENST00000691255.1SNHG1-2701073No protein-
 
lncRNA
---
ENST00000537869.6SNHG1-2051069No protein-
 
lncRNA
--TSL:3
ENST00000687243.1SNHG1-2641033No protein-
 
lncRNA
---
ENST00000686081.1SNHG1-2581018No protein-
 
lncRNA
---
ENST00000686740.1SNHG1-2621011No protein-
 
lncRNA
---
ENST00000686008.1SNHG1-257988No protein-
 
lncRNA
---
ENST00000693734.1SNHG1-274974No protein-
 
lncRNA
---
ENST00000690476.1SNHG1-268964No protein-
 
lncRNA
---
ENST00000539975.5SNHG1-212955No protein-
 
lncRNA
--TSL:5
ENST00000690542.1SNHG1-269935No protein-
 
lncRNA
---
ENST00000541578.6SNHG1-217897No protein-
 
lncRNA
--TSL:3
ENST00000539303.6SNHG1-210897No protein-
 
lncRNA
--TSL:3
ENST00000689664.1SNHG1-267843No protein-
 
lncRNA
---
ENST00000542112.5SNHG1-219780No protein-
 
lncRNA
--TSL:3
ENST00000545440.5SNHG1-223754No protein-
 
lncRNA
--TSL:2
ENST00000541615.5SNHG1-218748No protein-
 
lncRNA
--TSL:5
ENST00000537068.5SNHG1-204629No protein-
 
lncRNA
--TSL:5
ENST00000538266.5SNHG1-208347No protein-
 
lncRNA
--TSL:3
Statistics

Exons: 9, Coding exons: 0, Transcript length: 1,689 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000544550.6

Type

Retained intron

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript-based displays

    HASH(0x317b7a98)