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EnsemblEnsembl Home
Description

RNA binding motif protein 39 [Source:MGI Symbol;Acc:MGI:2157953]

Gene Synonyms

1500012C14Rik, 2310040E03Rik, B330012G18Rik, Caper alpha, Rnpc2, caper

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
Rbm39-203ENSMUST00000109587.92810530aaENSMUSP00000105216.3
 
Protein coding
CCDS16964Q8VH51-1 GENCODE basicTSL:1
Rbm39-201ENSMUST00000029149.132711524aaENSMUSP00000029149.7
 
Protein coding
CCDS71168Q8VH51-2 GENCODE basicAPPRIS P1TSL:1
Rbm39-217ENSMUST00000146297.82580524aaENSMUSP00000119298.2
 
Protein coding
CCDS71168Q8VH51-2 GENCODE basicAPPRIS P1TSL:1
Rbm39-204ENSMUST00000126992.81090273aaENSMUSP00000116950.2
 
Protein coding
-B7ZD61 TSL:5CDS 3' incomplete
Rbm39-220ENSMUST00000148794.8931311aaENSMUSP00000117462.2
 
Protein coding
-F7AA45 TSL:5CDS 5' and 3' incomplete
Rbm39-216ENSMUST00000146288.8754156aaENSMUSP00000114824.2
 
Protein coding
-B7ZD63 TSL:5CDS 3' incomplete
Rbm39-202ENSMUST00000109584.866738aaENSMUSP00000105213.2
 
Protein coding
-B7ZD64 GENCODE basicTSL:5
Rbm39-215ENSMUST00000142071.82744415aaENSMUSP00000116820.2
 
Nonsense mediated decay
-E9Q8F0 TSL:5
Rbm39-223ENSMUST00000153514.8212747aaENSMUSP00000119204.2
 
Nonsense mediated decay
-E9Q999 TSL:5
Rbm39-225ENSMUST00000155837.8212040aaENSMUSP00000119541.2
 
Nonsense mediated decay
-D6RCZ8 TSL:5
Rbm39-212ENSMUST00000137566.874340aaENSMUSP00000119054.2
 
Nonsense mediated decay
-D6RCZ8 TSL:3
Rbm39-218ENSMUST00000146549.870740aaENSMUSP00000115488.2
 
Nonsense mediated decay
-D6RCZ8 TSL:3
Rbm39-222ENSMUST00000152919.369940aaENSMUSP00000124018.2
 
Nonsense mediated decay
-D6RCZ8 TSL:5
Rbm39-219ENSMUST00000147098.859339aaENSMUSP00000120597.2
 
Nonsense mediated decay
-E9PZF9 TSL:3
Rbm39-224ENSMUST00000154677.858562aaENSMUSP00000121603.2
 
Nonsense mediated decay
-D6RJ85 TSL:5
Rbm39-214ENSMUST00000140001.2685No protein-
 
Processed transcript
--TSL:2
Rbm39-207ENSMUST00000131625.8546No protein-
 
Processed transcript
--TSL:2
Rbm39-221ENSMUST00000150272.8497No protein-
 
Processed transcript
--TSL:5
Rbm39-206ENSMUST00000130516.81456No protein-
 
Retained intron
--TSL:2
Rbm39-205ENSMUST00000128243.21008No protein-
 
Retained intron
--TSL:1
Rbm39-211ENSMUST00000137340.2715No protein-
 
Retained intron
--TSL:1
Rbm39-213ENSMUST00000138381.8711No protein-
 
Retained intron
--TSL:5
Rbm39-210ENSMUST00000137297.2707No protein-
 
Retained intron
--TSL:3
Rbm39-209ENSMUST00000135274.2695No protein-
 
Retained intron
--TSL:2
Rbm39-208ENSMUST00000132929.8672No protein-
 
Retained intron
--TSL:2
Description

endoplasmic reticulum-golgi intermediate compartment 1 [Source:HGNC Symbol;Acc:HGNC:29205]

Gene Synonyms

ERGIC-32, ERGIC32, KIAA1181, NET24

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ERGIC1-202ENST00000393784.82903290aaENSP00000377374.3
 
Protein coding
CCDS34292Q969X5-1 NM_001031711.3MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ERGIC1-201ENST00000326654.63952159aaENSP00000325127.2
 
Protein coding
-Q969X5-3 -GENCODE basicTSL:1
ERGIC1-206ENST00000519860.3100070aaENSP00000489795.1
 
Protein coding
-A0A1B0GTQ3 -GENCODE basicTSL:3
ERGIC1-212ENST00000523291.5586138aaENSP00000427713.1
 
Protein coding
-F2Z2U2 -GENCODE basicTSL:2
ERGIC1-203ENST00000518247.5554105aaENSP00000429501.1
 
Protein coding
-F2Z3Q5 -TSL:4CDS 3' incomplete
ERGIC1-205ENST00000519796.557854aaENSP00000428116.1
 
Nonsense mediated decay
-H0YAV2 -TSL:4CDS 5' incomplete
ERGIC1-209ENST00000520642.553955aaENSP00000428064.1
 
Nonsense mediated decay
-F2Z2P5 -TSL:4
ERGIC1-207ENST00000520326.5647No protein-
 
Processed transcript
---TSL:5
ERGIC1-210ENST00000521392.5566No protein-
 
Processed transcript
---TSL:4
ERGIC1-204ENST00000519567.5501No protein-
 
Processed transcript
---TSL:4
ERGIC1-214ENST00000523650.5488No protein-
 
Processed transcript
---TSL:3
ERGIC1-213ENST00000523366.1456No protein-
 
Processed transcript
---TSL:5
ERGIC1-208ENST00000520399.15687No protein-
 
Retained intron
---TSL:1
ERGIC1-211ENST00000523215.13621No protein-
 
Retained intron
---TSL:1
Description

MAX gene associated [Source:MGI Symbol;Acc:MGI:1352483]

Gene Synonyms

C130042M01Rik, D030062C11Rik, Mad5, Mga

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
Mga-204ENSMUST00000110774.8139313042aaENSMUSP00000106401.2
 
Protein coding
CCDS38208E9QLG3 GENCODE basicAPPRIS P3TSL:5
Mga-202ENSMUST00000079934.12133042833aaENSMUSP00000078853.6
 
Protein coding
CCDS50675H7BX50 GENCODE basicAPPRIS ALT2TSL:5
Mga-203ENSMUST00000110773.9135772924aaENSMUSP00000106400.3
 
Protein coding
-A2AWL7-3 GENCODE basicAPPRIS ALT2TSL:5
Mga-201ENSMUST00000046717.13119823003aaENSMUSP00000043795.7
 
Protein coding
-A2AWL7-1 GENCODE basicAPPRIS ALT2TSL:5
Mga-215ENSMUST00000156510.269952295aaENSMUSP00000119044.2
 
Protein coding
-A2AWL7-2 TSL:1CDS 3' incomplete
Mga-206ENSMUST00000129405.23317No protein-
 
Processed transcript
--TSL:1
Mga-205ENSMUST00000122889.22110No protein-
 
Processed transcript
--TSL:1
Mga-209ENSMUST00000138851.81264No protein-
 
Processed transcript
--TSL:1
Mga-214ENSMUST00000156074.2864No protein-
 
Processed transcript
--TSL:3
Mga-208ENSMUST00000132054.2739No protein-
 
Processed transcript
--TSL:3
Mga-213ENSMUST00000152148.2739No protein-
 
Processed transcript
--TSL:3
Mga-212ENSMUST00000151074.2649No protein-
 
Processed transcript
--TSL:3
Mga-210ENSMUST00000141776.82763No protein-
 
Retained intron
--TSL:1
Mga-207ENSMUST00000131396.2985No protein-
 
Retained intron
--TSL:2
Mga-211ENSMUST00000150742.2825No protein-
 
Retained intron
--TSL:2
Description

MUC20 overlapping transcript [Source:HGNC Symbol;Acc:HGNC:53807]

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSRefSeq MatchFlags
MUC20-OT1-319ENST00000629807.2466No protein-
 
lncRNA
--Ensembl CanonicalTSL:5
MUC20-OT1-212ENST00000445430.54208No protein-
 
lncRNA
--GENCODE basicTSL:1
MUC20-OT1-213ENST00000445707.32363No protein-
 
lncRNA
--GENCODE basicTSL:2
MUC20-OT1-207ENST00000429897.52131No protein-
 
lncRNA
--TSL:2
MUC20-OT1-231ENST00000597482.51476No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-219ENST00000453324.51439No protein-
 
lncRNA
--GENCODE basicTSL:1
MUC20-OT1-221ENST00000457233.51279No protein-
 
lncRNA
--GENCODE basicTSL:1
MUC20-OT1-293ENST00000627562.21184No protein-
 
lncRNA
--TSL:5
MUC20-OT1-217ENST00000451982.61161No protein-
 
lncRNA
--TSL:5
MUC20-OT1-336ENST00000631189.21156No protein-
 
lncRNA
--TSL:5
MUC20-OT1-243ENST00000601955.51123No protein-
 
lncRNA
--TSL:5
MUC20-OT1-238ENST00000600197.11090No protein-
 
lncRNA
--TSL:5
MUC20-OT1-222ENST00000593988.21072No protein-
 
lncRNA
--TSL:5
MUC20-OT1-274ENST00000626617.21014No protein-
 
lncRNA
--TSL:5
MUC20-OT1-235ENST00000598992.51005No protein-
 
lncRNA
--TSL:5
MUC20-OT1-294ENST00000627609.1992No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-254ENST00000625358.2962No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-247ENST00000608737.3956No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-324ENST00000630243.2955No protein-
 
lncRNA
--TSL:5
MUC20-OT1-223ENST00000594101.3955No protein-
 
lncRNA
--TSL:5
MUC20-OT1-331ENST00000630863.2954No protein-
 
lncRNA
--TSL:5
MUC20-OT1-268ENST00000626220.2932No protein-
 
lncRNA
--TSL:5
MUC20-OT1-297ENST00000627767.1929No protein-
 
lncRNA
--GENCODE basicTSL:2
MUC20-OT1-327ENST00000630417.2918No protein-
 
lncRNA
--TSL:5
MUC20-OT1-259ENST00000625776.2911No protein-
 
lncRNA
--TSL:5
MUC20-OT1-257ENST00000625632.2898No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-308ENST00000628547.2882No protein-
 
lncRNA
--TSL:5
MUC20-OT1-290ENST00000627502.2874No protein-
 
lncRNA
--TSL:5
MUC20-OT1-292ENST00000627555.2874No protein-
 
lncRNA
--TSL:5
MUC20-OT1-320ENST00000629823.2869No protein-
 
lncRNA
--TSL:5
MUC20-OT1-204ENST00000420851.6868No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-306ENST00000628439.2864No protein-
 
lncRNA
--TSL:5
MUC20-OT1-229ENST00000596584.4863No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-272ENST00000626569.2857No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-241ENST00000600527.5852No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-278ENST00000626870.2851No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-289ENST00000627471.2851No protein-
 
lncRNA
--TSL:5
MUC20-OT1-334ENST00000631087.1848No protein-
 
lncRNA
--TSL:5
MUC20-OT1-285ENST00000627152.2846No protein-
 
lncRNA
--TSL:5
MUC20-OT1-263ENST00000626007.2839No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-233ENST00000597871.1839No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-321ENST00000629990.1806No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-253ENST00000625338.1804No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-330ENST00000630830.1795No protein-
 
lncRNA
--TSL:5
MUC20-OT1-310ENST00000628668.2795No protein-
 
lncRNA
--TSL:5
MUC20-OT1-298ENST00000627863.2793No protein-
 
lncRNA
--TSL:5
MUC20-OT1-264ENST00000626089.2792No protein-
 
lncRNA
--TSL:5
MUC20-OT1-323ENST00000630197.2783No protein-
 
lncRNA
--TSL:5
MUC20-OT1-236ENST00000599448.5780No protein-
 
lncRNA
--TSL:5
MUC20-OT1-305ENST00000628392.2775No protein-
 
lncRNA
--TSL:5
MUC20-OT1-304ENST00000628301.2772No protein-
 
lncRNA
--TSL:5
MUC20-OT1-338ENST00000631288.2764No protein-
 
lncRNA
--TSL:5
MUC20-OT1-220ENST00000455807.2764No protein-
 
lncRNA
--TSL:3
MUC20-OT1-318ENST00000629721.2755No protein-
 
lncRNA
--TSL:5
MUC20-OT1-342ENST00000631366.2751No protein-
 
lncRNA
--TSL:5
MUC20-OT1-226ENST00000594976.5750No protein-
 
lncRNA
--TSL:5
MUC20-OT1-244ENST00000602127.5749No protein-
 
lncRNA
--TSL:5
MUC20-OT1-328ENST00000630663.1746No protein-
 
lncRNA
--TSL:5
MUC20-OT1-242ENST00000601648.5745No protein-
 
lncRNA
--TSL:3
MUC20-OT1-281ENST00000626969.2745No protein-
 
lncRNA
--TSL:5
MUC20-OT1-224ENST00000594446.5740No protein-
 
lncRNA
--TSL:5
MUC20-OT1-332ENST00000630874.2738No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-210ENST00000432601.3732No protein-
 
lncRNA
--TSL:5
MUC20-OT1-230ENST00000597034.5731No protein-
 
lncRNA
--TSL:5
MUC20-OT1-288ENST00000627363.2731No protein-
 
lncRNA
--TSL:5
MUC20-OT1-201ENST00000414625.6729No protein-
 
lncRNA
--TSL:5
MUC20-OT1-225ENST00000594715.5729No protein-
 
lncRNA
--TSL:5
MUC20-OT1-239ENST00000600288.5728No protein-
 
lncRNA
--TSL:5
MUC20-OT1-237ENST00000599566.5718No protein-
 
lncRNA
--TSL:5
MUC20-OT1-325ENST00000630387.2714No protein-
 
lncRNA
--TSL:5
MUC20-OT1-250ENST00000615493.4712No protein-
 
lncRNA
--TSL:5
MUC20-OT1-286ENST00000627297.2708No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-227ENST00000595086.5704No protein-
 
lncRNA
--TSL:5
MUC20-OT1-335ENST00000631105.2702No protein-
 
lncRNA
--TSL:5
MUC20-OT1-252ENST00000620737.3702No protein-
 
lncRNA
--TSL:5
MUC20-OT1-341ENST00000631359.2702No protein-
 
lncRNA
--TSL:5
MUC20-OT1-282ENST00000626979.2698No protein-
 
lncRNA
--TSL:5
MUC20-OT1-202ENST00000417704.5694No protein-
 
lncRNA
--TSL:3
MUC20-OT1-260ENST00000625824.2692No protein-
 
lncRNA
--TSL:5
MUC20-OT1-266ENST00000626156.1683No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-245ENST00000602175.5673No protein-
 
lncRNA
--TSL:5
MUC20-OT1-317ENST00000629686.2669No protein-
 
lncRNA
--TSL:5
MUC20-OT1-302ENST00000628125.2668No protein-
 
lncRNA
--TSL:5
MUC20-OT1-316ENST00000629537.2666No protein-
 
lncRNA
--TSL:5
MUC20-OT1-228ENST00000595382.5659No protein-
 
lncRNA
--TSL:5
MUC20-OT1-270ENST00000626346.2652No protein-
 
lncRNA
--TSL:5
MUC20-OT1-279ENST00000626872.2649No protein-
 
lncRNA
--TSL:5
MUC20-OT1-269ENST00000626233.2644No protein-
 
lncRNA
--TSL:5
MUC20-OT1-291ENST00000627512.2642No protein-
 
lncRNA
--TSL:5
MUC20-OT1-299ENST00000627993.2633No protein-
 
lncRNA
--TSL:5
MUC20-OT1-312ENST00000628823.2616No protein-
 
lncRNA
--TSL:5
MUC20-OT1-262ENST00000625971.2615No protein-
 
lncRNA
--TSL:5
MUC20-OT1-255ENST00000625383.2612No protein-
 
lncRNA
--TSL:5
MUC20-OT1-276ENST00000626706.1608No protein-
 
lncRNA
--TSL:5
MUC20-OT1-329ENST00000630675.2608No protein-
 
lncRNA
--TSL:5
MUC20-OT1-251ENST00000618708.3606No protein-
 
lncRNA
--TSL:5
MUC20-OT1-216ENST00000451228.5604No protein-
 
lncRNA
--TSL:3
MUC20-OT1-240ENST00000600382.5599No protein-
 
lncRNA
--TSL:5
MUC20-OT1-280ENST00000626904.2598No protein-
 
lncRNA
--TSL:5
MUC20-OT1-248ENST00000612098.4592No protein-
 
lncRNA
--TSL:5
MUC20-OT1-214ENST00000446521.1584No protein-
 
lncRNA
--TSL:4
MUC20-OT1-322ENST00000630170.2584No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-218ENST00000452844.5583No protein-
 
lncRNA
--GENCODE basicTSL:3
MUC20-OT1-301ENST00000628053.2582No protein-
 
lncRNA
--TSL:5
MUC20-OT1-234ENST00000597982.5579No protein-
 
lncRNA
--TSL:5
MUC20-OT1-232ENST00000597662.5570No protein-
 
lncRNA
--TSL:5
MUC20-OT1-326ENST00000630415.2560No protein-
 
lncRNA
--TSL:5
MUC20-OT1-314ENST00000628982.1554No protein-
 
lncRNA
--TSL:5
MUC20-OT1-303ENST00000628195.2552No protein-
 
lncRNA
--TSL:5
MUC20-OT1-273ENST00000626585.2544No protein-
 
lncRNA
--TSL:5
MUC20-OT1-203ENST00000420459.5543No protein-
 
lncRNA
--TSL:2
MUC20-OT1-307ENST00000628508.2542No protein-
 
lncRNA
--TSL:5
MUC20-OT1-206ENST00000425425.1525No protein-
 
lncRNA
--TSL:2
MUC20-OT1-211ENST00000438608.5525No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-340ENST00000631352.2523No protein-
 
lncRNA
--TSL:5
MUC20-OT1-271ENST00000626566.2521No protein-
 
lncRNA
--TSL:5
MUC20-OT1-287ENST00000627356.2519No protein-
 
lncRNA
--TSL:5
MUC20-OT1-300ENST00000628003.2511No protein-
 
lncRNA
--TSL:5
MUC20-OT1-277ENST00000626852.2511No protein-
 
lncRNA
--TSL:5
MUC20-OT1-296ENST00000627718.2510No protein-
 
lncRNA
--TSL:5
MUC20-OT1-339ENST00000631345.2507No protein-
 
lncRNA
--TSL:5
MUC20-OT1-209ENST00000432194.7503No protein-
 
lncRNA
--TSL:5
MUC20-OT1-283ENST00000627016.2503No protein-
 
lncRNA
--TSL:5
MUC20-OT1-258ENST00000625665.1496No protein-
 
lncRNA
--GENCODE basicTSL:5
MUC20-OT1-313ENST00000628917.2490No protein-
 
lncRNA
--TSL:5
MUC20-OT1-208ENST00000431767.5486No protein-
 
lncRNA
--TSL:5
MUC20-OT1-261ENST00000625882.2484No protein-
 
lncRNA
--TSL:5
MUC20-OT1-249ENST00000615212.4473No protein-
 
lncRNA
--TSL:5
MUC20-OT1-256ENST00000625531.2468No protein-
 
lncRNA
--TSL:5
MUC20-OT1-309ENST00000628567.2463No protein-
 
lncRNA
--TSL:5
MUC20-OT1-284ENST00000627035.2458No protein-
 
lncRNA
--TSL:5
MUC20-OT1-337ENST00000631263.2455No protein-
 
lncRNA
--TSL:5
MUC20-OT1-333ENST00000631037.2451No protein-
 
lncRNA
--TSL:5
MUC20-OT1-205ENST00000424730.5431No protein-
 
lncRNA
--TSL:5
MUC20-OT1-311ENST00000628754.2430No protein-
 
lncRNA
--TSL:5
MUC20-OT1-246ENST00000608699.3415No protein-
 
lncRNA
--TSL:5
MUC20-OT1-295ENST00000627689.2409No protein-
 
lncRNA
--TSL:5
MUC20-OT1-215ENST00000451216.6405No protein-
 
lncRNA
--TSL:5
MUC20-OT1-315ENST00000629511.2393No protein-
 
lncRNA
--TSL:5
MUC20-OT1-275ENST00000626677.1378No protein-
 
lncRNA
--TSL:5
MUC20-OT1-267ENST00000626178.2342No protein-
 
lncRNA
--TSL:5
MUC20-OT1-265ENST00000626093.1229No protein-
 
lncRNA
--TSL:5
Statistics

Exons: 8, Coding exons: 0, Transcript length: 1,156 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000631189.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

454 RNA-Seq supported [Definitions]

Transcript-based displays

    HASH(0x24c1f288)