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Description

VPS54 subunit of GARP complex [Source:ZFIN;Acc:ZDB-GENE-081022-176]

Gene Synonyms

zgc:195037

Location
Transcript IDNamebpProteinTranslation IDBiotypeUniProt MatchFlags
ENSDART00000170001.3vps54-20480531031aaENSDARP00000138816.3
 
Protein coding
A0A0R4IQF8 -
ENSDART00000165505.2vps54-2023235998aaENSDARP00000131039.2
 
Protein coding
A0A0R4IA59 APPRIS P1
ENSDART00000167536.2vps54-2032510799aaENSDARP00000133406.1
 
Protein coding
A0A0R4IIL8 CDS 3' incomplete
ENSDART00000161029.2vps54-2011589170aaENSDARP00000136610.1
 
Protein coding
A0A0R4IME0 CDS 5' incomplete
Description

ATRX chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]

Gene Synonyms

JMS, MRX52, RAD54, XH2, XNP

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000373344.11ATRX-201111652492aaENSP00000362441.4
 
Protein coding
CCDS14434A4LAA3 P46100 NM_000489.6MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P4TSL:1
ENST00000395603.7ATRX-202102182454aaENSP00000378967.3
 
Protein coding
CCDS14435P46100 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000675732.1ATRX-2245847858aaENSP00000502598.1
 
Protein coding
-A0A6Q8PHA4 -GENCODE basic
ENST00000624166.3ATRX-21442721351aaENSP00000485103.1
 
Protein coding
-A0A096LNL9 -TSL:1CDS 3' incomplete
ENST00000624032.3ATRX-2133071954aaENSP00000485253.1
 
Protein coding
-A0A096LNW1 -TSL:1CDS 3' incomplete
ENST00000493470.2ATRX-2072967293aaENSP00000485408.1
 
Protein coding
-A0A096LP59 -TSL:1CDS 5' incomplete
ENST00000623321.3ATRX-2111860528aaENSP00000485127.1
 
Protein coding
-A0A096LNN3 -TSL:1CDS 3' incomplete
ENST00000400866.4ATRX-203814198aaENSP00000383663.3
 
Protein coding
-H0Y3T0 -TSL:5CDS 5' incomplete
ENST00000622960.1ATRX-20862847aaENSP00000485587.1
 
Protein coding
-A0A096LPG6 -TSL:5CDS 3' incomplete
ENST00000625063.3ATRX-218593198aaENSP00000485099.1
 
Protein coding
-A0A096LNL6 -TSL:5CDS 5' and 3' incomplete
ENST00000624668.3ATRX-216583108aaENSP00000485100.1
 
Protein coding
-A0A096LNL7 -TSL:5CDS 3' incomplete
ENST00000480283.5ATRX-20610455164aaENSP00000480196.1
 
Nonsense mediated decay
-A0A087WWG0 -TSL:1
ENST00000623316.1ATRX-210803175aaENSP00000485274.1
 
Nonsense mediated decay
-A0A096LNX6 -TSL:5CDS 5' incomplete
ENST00000623242.3ATRX-20972566aaENSP00000485183.1
 
Nonsense mediated decay
-A0A096LNR8 -TSL:3CDS 5' incomplete
ENST00000635865.1ATRX-2191006aaENSP00000490150.1
 
Nonsense mediated decay
---TSL:5CDS 5' incomplete
ENST00000624193.1ATRX-215463No protein-
 
Processed transcript
---TSL:4
ENST00000637175.1ATRX-222100No protein-
 
Processed transcript
---TSL:5
ENST00000636152.1ATRX-220100No protein-
 
Processed transcript
---TSL:5
ENST00000636868.1ATRX-221100No protein-
 
Processed transcript
---TSL:5
ENST00000637959.1ATRX-22386No protein-
 
Processed transcript
---TSL:5
ENST00000623706.3ATRX-2127245No protein-
 
Retained intron
---TSL:2
ENST00000675908.1ATRX-2254653No protein-
 
Retained intron
----
ENST00000624766.1ATRX-217580No protein-
 
Retained intron
---TSL:2
ENST00000460639.2ATRX-204461No protein-
 
Retained intron
---TSL:3
ENST00000479487.1ATRX-205408No protein-
 
Retained intron
---TSL:3
Description

DEAD/H-box helicase 11 [Source:HGNC Symbol;Acc:HGNC:2736]

Gene Synonyms

CHL1, CHLR1, KRG2, WABS

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000542838.6DDX11-2233920906aaENSP00000443426.1
 
Protein coding
CCDS41767Q96FC9-2 NM_030653.4MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000545668.5DDX11-2293751970aaENSP00000440402.1
 
Protein coding
CCDS44856Q96FC9-1 -GENCODE basicTSL:1
ENST00000350437.8DDX11-2023724856aaENSP00000309965.5
 
Protein coding
CCDS8721Q96FC9-4 -GENCODE basicTSL:1
ENST00000228264.10DDX11-2013717880aaENSP00000228264.6
 
Protein coding
CCDS58224Q96FC9-3 -GENCODE basicTSL:1
ENST00000438391.6DDX11-2051135302aaENSP00000407646.2
 
Protein coding
-C9K0E8 -TSL:5CDS 3' incomplete
ENST00000539702.1DDX11-216951172aaENSP00000441015.1
 
Protein coding
-H0YFY8 -TSL:5CDS 5' incomplete
ENST00000415475.6DDX11-203883224aaENSP00000406457.2
 
Protein coding
-F5GXJ8 -TSL:3CDS 3' incomplete
ENST00000535317.5DDX11-207879191aaENSP00000440171.1
 
Protein coding
-F5GXL6 -TSL:3CDS 3' incomplete
ENST00000544652.1DDX11-22740091aaENSP00000473610.1
 
Protein coding
-R4GNE1 -TSL:5CDS 5' incomplete
ENST00000435753.6DDX11-2044182288aaENSP00000406799.2
 
Nonsense mediated decay
-Q96FC9-5 -TSL:5
ENST00000539049.5DDX11-2133471297aaENSP00000445568.1
 
Nonsense mediated decay
-F5H235 -TSL:5
ENST00000542129.5DDX11-2181561304aaENSP00000442466.1
 
Nonsense mediated decay
-B4DMS8 -TSL:2
ENST00000540935.5DDX11-2171210288aaENSP00000443578.1
 
Nonsense mediated decay
-F6WZM0 -TSL:2
ENST00000542244.5DDX11-2201193171aaENSP00000441425.1
 
Nonsense mediated decay
-F5GYY1 -TSL:1
ENST00000543756.5DDX11-22661378aaENSP00000439298.1
 
Nonsense mediated decay
-F5H2V9 -TSL:3
ENST00000545115.5DDX11-22854576aaENSP00000443750.1
 
Nonsense mediated decay
-H0YGL4 -TSL:5CDS 5' incomplete
ENST00000538345.1DDX11-21149831aaENSP00000445219.1
 
Nonsense mediated decay
-H0YGX9 -TSL:5CDS 5' incomplete
ENST00000539673.5DDX11-214652No protein-
 
Processed transcript
---TSL:3
ENST00000545717.1DDX11-230617No protein-
 
Processed transcript
---TSL:3
ENST00000536265.5DDX11-2083603No protein-
 
Retained intron
---TSL:5
ENST00000543026.5DDX11-2242066No protein-
 
Retained intron
---TSL:2
ENST00000535158.5DDX11-2061718No protein-
 
Retained intron
---TSL:2
ENST00000536580.5DDX11-209838No protein-
 
Retained intron
---TSL:5
ENST00000542242.1DDX11-219795No protein-
 
Retained intron
---TSL:5
ENST00000538740.1DDX11-212750No protein-
 
Retained intron
---TSL:5
ENST00000543511.1DDX11-225571No protein-
 
Retained intron
---TSL:5
ENST00000539699.5DDX11-215569No protein-
 
Retained intron
---TSL:2
ENST00000542661.1DDX11-221562No protein-
 
Retained intron
---TSL:5
ENST00000542777.1DDX11-222489No protein-
 
Retained intron
---TSL:2
ENST00000537136.1DDX11-210482No protein-
 
Retained intron
---TSL:4
Description

TTN antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44124]

Transcript IDNamebpProteinTranslation IDBiotypeCCDSRefSeq MatchFlags
ENST00000659121.1TTN-AS1-2766297No protein-
 
lncRNA
--Ensembl CanonicalGENCODE basic
ENST00000419746.5TTN-AS1-2034592No protein-
 
lncRNA
--GENCODE basicTSL:1
ENST00000653807.1TTN-AS1-2723996No protein-
 
lncRNA
---
ENST00000657818.1TTN-AS1-2753041No protein-
 
lncRNA
---
ENST00000657210.1TTN-AS1-2743002No protein-
 
lncRNA
---
ENST00000664161.1TTN-AS1-2782691No protein-
 
lncRNA
---
ENST00000657023.1TTN-AS1-2732491No protein-
 
lncRNA
--GENCODE basic
ENST00000590773.6TTN-AS1-2382377No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000664776.1TTN-AS1-2792261No protein-
 
lncRNA
---
ENST00000671355.1TTN-AS1-2802244No protein-
 
lncRNA
---
ENST00000456053.5TTN-AS1-2092033No protein-
 
lncRNA
--GENCODE basicTSL:2
ENST00000582038.2TTN-AS1-2111956No protein-
 
lncRNA
--TSL:2
ENST00000592600.6TTN-AS1-2461748No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000582847.6TTN-AS1-2121560No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000431259.6TTN-AS1-2041472No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000604956.1TTN-AS1-2521360No protein-
 
lncRNA
--TSL:NA
ENST00000627564.2TTN-AS1-2641319No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000588804.5TTN-AS1-2271118No protein-
 
lncRNA
--TSL:5
ENST00000589487.5TTN-AS1-2321077No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000589434.5TTN-AS1-2311066No protein-
 
lncRNA
--TSL:5
ENST00000591466.6TTN-AS1-2421058No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000587944.5TTN-AS1-223991No protein-
 
lncRNA
--TSL:5
ENST00000585451.5TTN-AS1-215949No protein-
 
lncRNA
--TSL:5
ENST00000585625.5TTN-AS1-217945No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000663178.1TTN-AS1-277922No protein-
 
lncRNA
---
ENST00000630096.2TTN-AS1-270915No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000626954.2TTN-AS1-262864No protein-
 
lncRNA
--TSL:5
ENST00000442329.7TTN-AS1-207861No protein-
 
lncRNA
--TSL:2
ENST00000590040.5TTN-AS1-236855No protein-
 
lncRNA
--TSL:5
ENST00000584485.1TTN-AS1-213838No protein-
 
lncRNA
--TSL:3
ENST00000586707.6TTN-AS1-219835No protein-
 
lncRNA
--TSL:5
ENST00000586452.5TTN-AS1-218828No protein-
 
lncRNA
--TSL:5
ENST00000588257.5TTN-AS1-225814No protein-
 
lncRNA
--TSL:5
ENST00000590743.1TTN-AS1-237812No protein-
 
lncRNA
--TSL:5
ENST00000589391.5TTN-AS1-230811No protein-
 
lncRNA
--TSL:5
ENST00000627661.2TTN-AS1-265806No protein-
 
lncRNA
--TSL:5
ENST00000620591.4TTN-AS1-256797No protein-
 
lncRNA
--TSL:5
ENST00000627527.1TTN-AS1-263784No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000592689.5TTN-AS1-248767No protein-
 
lncRNA
--TSL:5
ENST00000585358.5TTN-AS1-214760No protein-
 
lncRNA
--TSL:5
ENST00000589234.5TTN-AS1-228751No protein-
 
lncRNA
--TSL:5
ENST00000592182.5TTN-AS1-245749No protein-
 
lncRNA
--TSL:5
ENST00000591867.5TTN-AS1-243748No protein-
 
lncRNA
--TSL:5
ENST00000588244.5TTN-AS1-224743No protein-
 
lncRNA
--TSL:5
ENST00000590807.5TTN-AS1-239728No protein-
 
lncRNA
--TSL:5
ENST00000450692.6TTN-AS1-208723No protein-
 
lncRNA
--TSL:5
ENST00000586831.5TTN-AS1-220718No protein-
 
lncRNA
--TSL:5
ENST00000610005.1TTN-AS1-253715No protein-
 
lncRNA
--TSL:5
ENST00000629117.2TTN-AS1-269710No protein-
 
lncRNA
--TSL:5
ENST00000590932.5TTN-AS1-240701No protein-
 
lncRNA
--TSL:5
ENST00000626138.2TTN-AS1-260693No protein-
 
lncRNA
--TSL:5
ENST00000625536.2TTN-AS1-258693No protein-
 
lncRNA
--TSL:5
ENST00000578746.1TTN-AS1-210677No protein-
 
lncRNA
--TSL:3
ENST00000592630.5TTN-AS1-247666No protein-
 
lncRNA
--TSL:5
ENST00000628826.2TTN-AS1-267662No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000585487.6TTN-AS1-216651No protein-
 
lncRNA
--TSL:3
ENST00000610290.4TTN-AS1-254647No protein-
 
lncRNA
--TSL:5
ENST00000589842.5TTN-AS1-234635No protein-
 
lncRNA
--TSL:5
ENST00000625480.2TTN-AS1-257633No protein-
 
lncRNA
--TSL:5
ENST00000592750.5TTN-AS1-249619No protein-
 
lncRNA
--TSL:5
ENST00000431752.1TTN-AS1-205609No protein-
 
lncRNA
--TSL:3
ENST00000587568.5TTN-AS1-221607No protein-
 
lncRNA
--TSL:5
ENST00000588716.5TTN-AS1-226604No protein-
 
lncRNA
--TSL:5
ENST00000629094.2TTN-AS1-268604No protein-
 
lncRNA
--TSL:5
ENST00000592836.5TTN-AS1-250595No protein-
 
lncRNA
--TSL:5
ENST00000592161.1TTN-AS1-244587No protein-
 
lncRNA
--TSL:5
ENST00000604571.1TTN-AS1-251587No protein-
 
lncRNA
--TSL:5
ENST00000626117.2TTN-AS1-259572No protein-
 
lncRNA
--TSL:5
ENST00000589907.5TTN-AS1-235568No protein-
 
lncRNA
--TSL:5
ENST00000418062.1TTN-AS1-202544No protein-
 
lncRNA
--TSL:4
ENST00000591332.5TTN-AS1-241528No protein-
 
lncRNA
--TSL:5
ENST00000589355.1TTN-AS1-229498No protein-
 
lncRNA
--TSL:3
ENST00000628296.2TTN-AS1-266483No protein-
 
lncRNA
--TSL:5
ENST00000614124.1TTN-AS1-255463No protein-
 
lncRNA
--TSL:5
ENST00000415561.1TTN-AS1-201439No protein-
 
lncRNA
--TSL:3
ENST00000438095.1TTN-AS1-206436No protein-
 
lncRNA
--TSL:3
ENST00000626517.2TTN-AS1-261418No protein-
 
lncRNA
--TSL:5
ENST00000587576.1TTN-AS1-222399No protein-
 
lncRNA
--TSL:3
ENST00000589830.1TTN-AS1-233287No protein-
 
lncRNA
--TSL:5
ENST00000631319.1TTN-AS1-271195No protein-
 
lncRNA
--TSL:5
Statistics

Exons: 3, Coding exons: 0, Transcript length: 439 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000415561.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript-based displays

    HASH(0x2829d798)