Human (GRCh38.p14)
Description

DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]

Gene Synonyms

RHELP, RNAHP, SF3B125, SF3B8

Location
About this transcript

This transcript has 18 exons, is annotated with 35 domains and features, is associated with 21612 variant alleles and maps to 836 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000389924.7DDX42-2023959938aaENSP00000374574.2
 
Protein coding
CCDS32704Q86XP3-1 NM_203499.3MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:5
ENST00000578681.5DDX42-2074337938aaENSP00000464050.1
 
Protein coding
CCDS32704Q86XP3-1 -GENCODE basicAPPRIS P1TSL:1
ENST00000583590.5DDX42-2154148938aaENSP00000463561.1
 
Protein coding
CCDS32704Q86XP3-1 -GENCODE basicAPPRIS P1TSL:5
ENST00000359353.9DDX42-2012783819aaENSP00000352308.5
 
Protein coding
Q86XP3-2 -GENCODE basicTSL:5
ENST00000581135.5DDX42-211589104aaENSP00000464232.1
 
Protein coding
J3QRI2 -TSL:4CDS 3' incomplete
ENST00000577940.6DDX42-203142799aaENSP00000461957.1
 
Nonsense mediated decay
J3KRE3 -TSL:5CDS 5' incomplete
ENST00000578137.5DDX42-205857159aaENSP00000463038.1
 
Nonsense mediated decay
J3KTK9 -TSL:3
ENST00000584261.5DDX42-21751070aaENSP00000462174.1
 
Nonsense mediated decay
J3KRV0 -TSL:3CDS 5' incomplete
ENST00000582985.1DDX42-214543No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000584010.5DDX42-2163929No protein-
 
Retained intron
--TSL:2
ENST00000578593.1DDX42-2062919No protein-
 
Retained intron
--TSL:2
ENST00000581767.1DDX42-2132244No protein-
 
Retained intron
--TSL:NA
ENST00000579511.1DDX42-208594No protein-
 
Retained intron
--TSL:5
ENST00000584951.1DDX42-218591No protein-
 
Retained intron
--TSL:2
ENST00000577978.1DDX42-204581No protein-
 
Retained intron
--TSL:5
ENST00000579539.1DDX42-209571No protein-
 
Retained intron
--TSL:2
ENST00000580108.1DDX42-210545No protein-
 
Retained intron
--TSL:3
ENST00000581477.1DDX42-212494No protein-
 
Retained intron
--TSL:2
Statistics

Exons: 18, Coding exons: 17, Transcript length: 3,959 bps, Translation length: 938 residues

MANE

This MANE Select transcript contains ENSP00000374574 and matches to NM_203499.3 and NP_987095.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86XP3

CCDS

This transcript is a member of the Human CCDS set: CCDS32704

Transcript Support Level (TSL)

TSL:5

Version

ENST00000389924.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.