Human (GRCh38.p14)
Description

SPG7 matrix AAA peptidase subunit, paraplegin [Source:HGNC Symbol;Acc:HGNC:11237]

Gene Synonyms

CAR, CMAR, SPG5C

Location
About this transcript

This transcript has 16 exons, is associated with 29073 variant alleles and maps to 393 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000645818.2SPG7-2683076795aaENSP00000495795.2
 
Protein coding
CCDS10977Q9UQ90-1 NM_003119.4MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P2
ENST00000647079.1SPG7-2903330659aaENSP00000495967.1
 
Protein coding
A0A2R8Y726 -GENCODE basic
ENST00000645063.1SPG7-2623266809aaENSP00000493590.1
 
Protein coding
CCDS92212A0A2R8Y3M4 -GENCODE basic
ENST00000646303.1SPG7-2773099751aaENSP00000494160.1
 
Protein coding
A0A2R8Y4Y7 -GENCODE basic
ENST00000268704.7SPG7-2013026788aaENSP00000268704.3
 
Protein coding
A0A2U3TZH1 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000644781.1SPG7-2583012780aaENSP00000495473.1
 
Protein coding
A0A2R8YFW4 -GENCODE basic
ENST00000644671.1SPG7-2552689681aaENSP00000495999.1
 
Protein coding
A0A2R8Y7B8 -CDS 5' incomplete
ENST00000647032.1SPG7-2892644617aaENSP00000496047.1
 
Protein coding
A0A2R8Y7E2 -CDS 5' incomplete
ENST00000645897.1SPG7-2712593641aaENSP00000495293.1
 
Protein coding
A0A2R8Y6K2 -GENCODE basic
ENST00000643649.1SPG7-2402507758aaENSP00000494806.1
 
Protein coding
A0A2R8YDQ1 -GENCODE basic
ENST00000341316.6SPG7-2022288489aaENSP00000341157.2
 
Protein coding
CCDS10978Q9UQ90-2 -GENCODE basicTSL:1
ENST00000646716.1SPG7-2852264493aaENSP00000495593.1
 
Protein coding
A0A2R8YEH4 -GENCODE basic
ENST00000646445.1SPG7-2791890415aaENSP00000496434.1
 
Protein coding
A0A2R8YGZ0 -CDS 5' incomplete
ENST00000643307.1SPG7-2341794507aaENSP00000495673.1
 
Protein coding
A0A2R8Y729 -GENCODE basic
ENST00000567138.3SPG7-2161376114aaENSP00000483351.2
 
Protein coding
A0A087X0F5 -TSL:2CDS 5' incomplete
ENST00000565891.2SPG7-21280781aaENSP00000495004.1
 
Protein coding
A0A2R8YDW8 -TSL:2CDS 5' incomplete
ENST00000566371.6SPG7-214740238aaENSP00000454475.2
 
Protein coding
H3BMP1 -TSL:3CDS 3' incomplete
ENST00000646930.1SPG7-2874321463aaENSP00000495219.1
 
Nonsense mediated decay
A0A2R8Y632 --
ENST00000644901.1SPG7-2594288278aaENSP00000493797.1
 
Nonsense mediated decay
A0A2R8Y4L0 --
ENST00000644498.1SPG7-2534255456aaENSP00000496244.1
 
Nonsense mediated decay
A0A2R8Y7N2 --
ENST00000642334.1SPG7-2264100421aaENSP00000496403.1
 
Nonsense mediated decay
A0A2R8YFF4 -CDS 5' incomplete
ENST00000643954.1SPG7-2443938383aaENSP00000493826.1
 
Nonsense mediated decay
A0A2R8Y4M0 -CDS 5' incomplete
ENST00000643668.1SPG7-2413851164aaENSP00000494903.1
 
Nonsense mediated decay
A0A2R8YDU1 --
ENST00000646399.1SPG7-2783776358aaENSP00000495734.1
 
Nonsense mediated decay
A0A2R8YG79 -CDS 5' incomplete
ENST00000643105.1SPG7-2323748485aaENSP00000495260.1
 
Nonsense mediated decay
A0A2R8Y6E8 -CDS 5' incomplete
ENST00000646263.1SPG7-2763401489aaENSP00000494119.1
 
Nonsense mediated decay
CCDS10978Q9UQ90-2 --
ENST00000645042.1SPG7-2613367511aaENSP00000493908.1
 
Nonsense mediated decay
A0A2R8YFJ7 --
ENST00000569820.6SPG7-222331370aaENSP00000454805.1
 
Nonsense mediated decay
H3BNE4 -TSL:5CDS 5' incomplete
ENST00000646826.1SPG7-2863249511aaENSP00000495123.1
 
Nonsense mediated decay
A0A2R8YFJ7 --
ENST00000646531.1SPG7-2813216511aaENSP00000495185.1
 
Nonsense mediated decay
A0A2R8YFJ7 --
ENST00000645354.1SPG7-2642922250aaENSP00000494158.1
 
Nonsense mediated decay
A0A2R8Y4L7 -CDS 5' incomplete
ENST00000643724.1SPG7-2422882258aaENSP00000496335.1
 
Nonsense mediated decay
A0A2R8YGV4 --
ENST00000644210.1SPG7-2492817511aaENSP00000495675.1
 
Nonsense mediated decay
A0A2R8YFJ7 --
ENST00000647227.1SPG7-292267027aaENSP00000495783.1
 
Nonsense mediated decay
A0A2R8YG90 -CDS 5' incomplete
ENST00000643345.1SPG7-2352665126aaENSP00000493982.1
 
Nonsense mediated decay
A0A2R8YCU3 --
ENST00000646589.1SPG7-2832565128aaENSP00000494739.1
 
Nonsense mediated decay
A0A2R8YDM8 --
ENST00000645886.1SPG7-2702537206aaENSP00000494111.1
 
Nonsense mediated decay
A0A2R8Y4Z7 -CDS 5' incomplete
ENST00000644751.1SPG7-2572233320aaENSP00000493934.1
 
Nonsense mediated decay
A0A2R8Y4M8 -CDS 5' incomplete
ENST00000566682.2SPG7-2151321357aaENSP00000461979.2
 
Nonsense mediated decay
J3KRF6 -TSL:3CDS 5' incomplete
ENST00000564409.2SPG7-2101314181aaENSP00000495297.1
 
Nonsense mediated decay
A0A2R8YFN9 -TSL:3CDS 5' incomplete
ENST00000642371.1SPG7-2271289208aaENSP00000495352.1
 
Nonsense mediated decay
A0A2R8YFQ9 -CDS 5' incomplete
ENST00000645533.1SPG7-2661225339aaENSP00000495690.1
 
Nonsense mediated decay
A0A2R8Y6Z7 --
ENST00000561911.5SPG7-2041025210aaENSP00000457387.1
 
Nonsense mediated decay
H3BTY6 -TSL:5CDS 5' incomplete
ENST00000645258.1SPG7-263986107aaENSP00000496510.1
 
Nonsense mediated decay
A0A2R8Y856 -CDS 5' incomplete
ENST00000643957.1SPG7-245936107aaENSP00000494246.1
 
Nonsense mediated decay
A0A2R8Y530 -CDS 5' incomplete
ENST00000566221.5SPG7-213734106aaENSP00000457298.1
 
Nonsense mediated decay
H3BTR8 -TSL:3CDS 5' incomplete
ENST00000643370.1SPG7-237726162aaENSP00000494895.1
 
Nonsense mediated decay
A0A2R8Y617 -CDS 5' incomplete
ENST00000644044.1SPG7-24651656aaENSP00000494000.1
 
Nonsense mediated decay
A0A2R8YDS3 -CDS 5' incomplete
ENST00000611189.2SPG7-2235423No protein-
 
Protein coding CDS not defined
--TSL:NA
ENST00000643496.1SPG7-2392859No protein-
 
Protein coding CDS not defined
---
ENST00000645842.1SPG7-2692742No protein-
 
Protein coding CDS not defined
---
ENST00000643350.1SPG7-2362475No protein-
 
Protein coding CDS not defined
---
ENST00000645742.1SPG7-2671677No protein-
 
Protein coding CDS not defined
---
ENST00000568509.3SPG7-2191632No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000563783.6SPG7-208931No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000646707.1SPG7-284919No protein-
 
Protein coding CDS not defined
---
ENST00000647239.1SPG7-293821No protein-
 
Protein coding CDS not defined
---
ENST00000565370.1SPG7-211686No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000643178.1SPG7-233669No protein-
 
Protein coding CDS not defined
---
ENST00000569363.2SPG7-220617No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000568151.1SPG7-217544No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000642436.1SPG7-229422No protein-
 
Protein coding CDS not defined
---
ENST00000644556.1SPG7-254323No protein-
 
Protein coding CDS not defined
---
ENST00000644748.1SPG7-2566369No protein-
 
Retained intron
---
ENST00000643734.1SPG7-2434754No protein-
 
Retained intron
---
ENST00000644225.1SPG7-2504581No protein-
 
Retained intron
---
ENST00000647476.1SPG7-2954252No protein-
 
Retained intron
---
ENST00000645977.1SPG7-2744168No protein-
 
Retained intron
---
ENST00000644171.1SPG7-2483802No protein-
 
Retained intron
---
ENST00000561702.6SPG7-2033729No protein-
 
Retained intron
--TSL:2
ENST00000644281.1SPG7-2513728No protein-
 
Retained intron
---
ENST00000647302.1SPG7-2943692No protein-
 
Retained intron
---
ENST00000643409.1SPG7-2383475No protein-
 
Retained intron
---
ENST00000645392.1SPG7-2653384No protein-
 
Retained intron
---
ENST00000644464.1SPG7-2523119No protein-
 
Retained intron
---
ENST00000642226.1SPG7-2243110No protein-
 
Retained intron
---
ENST00000647123.1SPG7-2912991No protein-
 
Retained intron
---
ENST00000644930.1SPG7-2602969No protein-
 
Retained intron
---
ENST00000646958.1SPG7-2882931No protein-
 
Retained intron
---
ENST00000564047.2SPG7-2092893No protein-
 
Retained intron
--TSL:2
ENST00000646005.1SPG7-2752796No protein-
 
Retained intron
---
ENST00000647491.1SPG7-2962788No protein-
 
Retained intron
---
ENST00000642984.1SPG7-2312765No protein-
 
Retained intron
---
ENST00000645952.1SPG7-2732668No protein-
 
Retained intron
---
ENST00000646543.1SPG7-2822626No protein-
 
Retained intron
---
ENST00000645944.1SPG7-2722249No protein-
 
Retained intron
---
ENST00000642814.1SPG7-2302245No protein-
 
Retained intron
---
ENST00000562775.2SPG7-2061534No protein-
 
Retained intron
--TSL:1
ENST00000569720.2SPG7-2211403No protein-
 
Retained intron
--TSL:2
ENST00000642427.1SPG7-2281317No protein-
 
Retained intron
---
ENST00000642263.1SPG7-2251178No protein-
 
Retained intron
---
ENST00000646454.1SPG7-2801060No protein-
 
Retained intron
---
ENST00000563218.6SPG7-207976No protein-
 
Retained intron
--TSL:5
ENST00000561945.2SPG7-205803No protein-
 
Retained intron
--TSL:3
ENST00000644061.1SPG7-247526No protein-
 
Retained intron
---
ENST00000568205.1SPG7-218463No protein-
 
Retained intron
--TSL:2
Statistics

Exons: 16, Coding exons: 6, Transcript length: 2,922 bps, Translation length: 250 residues

Incomplete CDS

CDS 5' incomplete

Version

ENST00000645354.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]