Human (GRCh38.p14)
Description

semaphorin 4D [Source:HGNC Symbol;Acc:HGNC:10732]

Gene Synonyms

C9ORF164, CD100, COLL-4, FLJ39737, SEMAJ

Location
About this transcript

This transcript has 16 exons, is annotated with 30 domains and features, is associated with 56255 variant alleles and maps to 696 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000422704.7SEMA4D-2084562862aaENSP00000388768.2
 
Protein coding
CCDS6685Q92854-1 NM_001371194.2MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000450295.5SEMA4D-2125684862aaENSP00000416523.1
 
Protein coding
CCDS6685Q92854-1 -GENCODE basicAPPRIS P1TSL:1
ENST00000438547.6SEMA4D-2114824862aaENSP00000405102.2
 
Protein coding
CCDS6685Q92854-1 -GENCODE basicAPPRIS P1TSL:1
ENST00000356444.6SEMA4D-2024503862aaENSP00000348822.2
 
Protein coding
CCDS6685Q92854-1 -GENCODE basicAPPRIS P1TSL:5
ENST00000420987.5SEMA4D-2074275738aaENSP00000391733.1
 
Protein coding
CCDS47991Q92854-2 -GENCODE basicTSL:5
ENST00000339861.8SEMA4D-2014258738aaENSP00000344923.4
 
Protein coding
CCDS47991Q92854-2 -GENCODE basicTSL:5
ENST00000455551.6SEMA4D-2133594738aaENSP00000411981.2
 
Protein coding
CCDS47991Q92854-2 -GENCODE basicTSL:5
ENST00000420101.6SEMA4D-2041837123aaENSP00000399948.2
 
Protein coding
A0A0C4DG45 -GENCODE basicTSL:1
ENST00000420681.6SEMA4D-206907146aaENSP00000390754.2
 
Protein coding
C9JFP1 -TSL:5CDS 3' incomplete
ENST00000540475.5SEMA4D-22382666aaENSP00000438389.1
 
Protein coding
F5H044 -TSL:3CDS 3' incomplete
ENST00000433650.5SEMA4D-21060275aaENSP00000413352.1
 
Protein coding
C9JYS7 -TSL:3CDS 3' incomplete
ENST00000418828.1SEMA4D-20356359aaENSP00000416747.1
 
Protein coding
C9JD54 -TSL:4CDS 3' incomplete
ENST00000420670.5SEMA4D-2054331aaENSP00000405652.1
 
Protein coding
--TSL:3CDS 3' incomplete
ENST00000429836.5SEMA4D-2092895548aaENSP00000395222.1
 
Nonsense mediated decay
E9PFD9 -TSL:2
ENST00000537934.5SEMA4D-2212710548aaENSP00000446394.1
 
Nonsense mediated decay
E9PFD9 -TSL:2
ENST00000469653.5SEMA4D-2153533No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000475255.5SEMA4D-2173053No protein-
 
Protein coding CDS not defined
--TSL:1
ENST00000482128.1SEMA4D-218493No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000464051.1SEMA4D-214317No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000492386.5SEMA4D-2202396No protein-
 
Retained intron
--TSL:2
ENST00000486935.2SEMA4D-219969No protein-
 
Retained intron
--TSL:2
ENST00000544513.1SEMA4D-224599No protein-
 
Retained intron
--TSL:5
ENST00000474258.1SEMA4D-216528No protein-
 
Retained intron
--TSL:4
ENST00000540183.1SEMA4D-222176No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 16, Coding exons: 14, Transcript length: 4,562 bps, Translation length: 862 residues

MANE

This MANE Select transcript contains ENSP00000388768 and matches to NM_001371194.2 and NP_001358123.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q92854

CCDS

This transcript is a member of the Human CCDS set: CCDS6685

Transcript Support Level (TSL)

TSL:1

Version

ENST00000422704.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.