Human (GRCh38.p14)
Description

serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852]

Gene Synonyms

MSHMT, SHMT

Location
About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 887 variant alleles and maps to 405 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000328923.8SHMT2-2012157504aaENSP00000333667.3
 
Protein coding
CCDS8934P34897-1 NM_005412.6MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000449049.7SHMT2-2032121483aaENSP00000413770.3
 
Protein coding
CCDS53805P34897-3 -GENCODE basicTSL:2
ENST00000414700.7SHMT2-2022006483aaENSP00000406881.3
 
Protein coding
CCDS53805P34897-3 -GENCODE basicTSL:1
ENST00000557487.5SHMT2-2321918494aaENSP00000452315.1
 
Protein coding
CCDS55837P34897-2 -GENCODE basicTSL:1
ENST00000553474.5SHMT2-2051765483aaENSP00000452419.1
 
Protein coding
CCDS53805P34897-3 -GENCODE basicTSL:2
ENST00000557529.1SHMT2-2331369264aaENSP00000450490.1
 
Protein coding
H0YIZ0 -TSL:2CDS 5' incomplete
ENST00000555634.5SHMT2-220964234aaENSP00000450930.1
 
Protein coding
G3V2Y4 -TSL:5CDS 3' incomplete
ENST00000554975.5SHMT2-216780215aaENSP00000452404.1
 
Protein coding
G3V5L0 -TSL:3CDS 3' incomplete
ENST00000556689.5SHMT2-223768237aaENSP00000452035.1
 
Protein coding
G3V4W5 -TSL:3CDS 3' incomplete
ENST00000555773.5SHMT2-221600149aaENSP00000451968.1
 
Protein coding
G3V4T0 -TSL:2CDS 3' incomplete
ENST00000554310.5SHMT2-211579160aaENSP00000450893.1
 
Protein coding
G3V2W0 -TSL:4CDS 3' incomplete
ENST00000556737.1SHMT2-224572147aaENSP00000451495.1
 
Protein coding
G3V3Y8 -TSL:2CDS 3' incomplete
ENST00000557427.5SHMT2-230569159aaENSP00000452045.1
 
Protein coding
G3V4X0 -TSL:4CDS 3' incomplete
ENST00000553529.5SHMT2-206562147aaENSP00000452161.1
 
Protein coding
G3V3Y8 -TSL:4CDS 3' incomplete
ENST00000557703.5SHMT2-234542142aaENSP00000450452.1
 
Protein coding
G3V241 -TSL:4CDS 3' incomplete
ENST00000555774.5SHMT2-222231165aaENSP00000451872.1
 
Nonsense mediated decay
G3V2Y1 -TSL:1
ENST00000556825.5SHMT2-226221586aaENSP00000451169.1
 
Nonsense mediated decay
G3V3C6 -TSL:1
ENST00000553837.5SHMT2-2072152192aaENSP00000451371.1
 
Nonsense mediated decay
G3V540 -TSL:5
ENST00000557433.5SHMT2-2311904171aaENSP00000450610.1
 
Nonsense mediated decay
G3V2E4 -TSL:1
ENST00000555116.5SHMT2-217188565aaENSP00000452339.1
 
Nonsense mediated decay
G3V2Y1 -TSL:2
ENST00000557348.5SHMT2-229165965aaENSP00000450927.1
 
Nonsense mediated decay
G3V2Y1 -TSL:2
ENST00000555563.5SHMT2-21989586aaENSP00000451630.1
 
Nonsense mediated decay
G3V3C6 -TSL:5
ENST00000554604.5SHMT2-214879192aaENSP00000452163.1
 
Nonsense mediated decay
G3V540 -TSL:5
ENST00000557269.5SHMT2-22757652aaENSP00000450594.1
 
Nonsense mediated decay
G3V2D2 -TSL:5
ENST00000554600.5SHMT2-213837No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000554656.5SHMT2-215817No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000557740.5SHMT2-235569No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000553949.1SHMT2-209552No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000554467.5SHMT2-2123416No protein-
 
Retained intron
--TSL:2
ENST00000553868.1SHMT2-208941No protein-
 
Retained intron
--TSL:2
ENST00000555213.1SHMT2-218611No protein-
 
Retained intron
--TSL:3
ENST00000553950.5SHMT2-210584No protein-
 
Retained intron
--TSL:2
ENST00000553324.5SHMT2-204566No protein-
 
Retained intron
--TSL:4
ENST00000556798.1SHMT2-225525No protein-
 
Retained intron
--TSL:2
ENST00000557302.1SHMT2-228457No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 5, Coding exons: 4, Transcript length: 569 bps, Translation length: 159 residues

Transcript Support Level (TSL)

TSL:4

Incomplete CDS

CDS 3' incomplete

Version

ENST00000557427.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.