Human (GRCh38.p14)
Description

serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852]

Gene Synonyms

MSHMT, SHMT

Location
About this transcript

This transcript has 12 exons, is annotated with 11 domains and features, is associated with 2503 variant alleles and maps to 706 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000328923.8SHMT2-2012157504aaENSP00000333667.3
 
Protein coding
CCDS8934P34897-1 NM_005412.6MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000449049.7SHMT2-2032121483aaENSP00000413770.3
 
Protein coding
CCDS53805P34897-3 -GENCODE basicTSL:2
ENST00000414700.7SHMT2-2022006483aaENSP00000406881.3
 
Protein coding
CCDS53805P34897-3 -GENCODE basicTSL:1
ENST00000557487.5SHMT2-2321918494aaENSP00000452315.1
 
Protein coding
CCDS55837P34897-2 -GENCODE basicTSL:1
ENST00000553474.5SHMT2-2051765483aaENSP00000452419.1
 
Protein coding
CCDS53805P34897-3 -GENCODE basicTSL:2
ENST00000557529.1SHMT2-2331369264aaENSP00000450490.1
 
Protein coding
H0YIZ0 -TSL:2CDS 5' incomplete
ENST00000555634.5SHMT2-220964234aaENSP00000450930.1
 
Protein coding
G3V2Y4 -TSL:5CDS 3' incomplete
ENST00000554975.5SHMT2-216780215aaENSP00000452404.1
 
Protein coding
G3V5L0 -TSL:3CDS 3' incomplete
ENST00000556689.5SHMT2-223768237aaENSP00000452035.1
 
Protein coding
G3V4W5 -TSL:3CDS 3' incomplete
ENST00000555773.5SHMT2-221600149aaENSP00000451968.1
 
Protein coding
G3V4T0 -TSL:2CDS 3' incomplete
ENST00000554310.5SHMT2-211579160aaENSP00000450893.1
 
Protein coding
G3V2W0 -TSL:4CDS 3' incomplete
ENST00000556737.1SHMT2-224572147aaENSP00000451495.1
 
Protein coding
G3V3Y8 -TSL:2CDS 3' incomplete
ENST00000557427.5SHMT2-230569159aaENSP00000452045.1
 
Protein coding
G3V4X0 -TSL:4CDS 3' incomplete
ENST00000553529.5SHMT2-206562147aaENSP00000452161.1
 
Protein coding
G3V3Y8 -TSL:4CDS 3' incomplete
ENST00000557703.5SHMT2-234542142aaENSP00000450452.1
 
Protein coding
G3V241 -TSL:4CDS 3' incomplete
ENST00000555774.5SHMT2-222231165aaENSP00000451872.1
 
Nonsense mediated decay
G3V2Y1 -TSL:1
ENST00000556825.5SHMT2-226221586aaENSP00000451169.1
 
Nonsense mediated decay
G3V3C6 -TSL:1
ENST00000553837.5SHMT2-2072152192aaENSP00000451371.1
 
Nonsense mediated decay
G3V540 -TSL:5
ENST00000557433.5SHMT2-2311904171aaENSP00000450610.1
 
Nonsense mediated decay
G3V2E4 -TSL:1
ENST00000555116.5SHMT2-217188565aaENSP00000452339.1
 
Nonsense mediated decay
G3V2Y1 -TSL:2
ENST00000557348.5SHMT2-229165965aaENSP00000450927.1
 
Nonsense mediated decay
G3V2Y1 -TSL:2
ENST00000555563.5SHMT2-21989586aaENSP00000451630.1
 
Nonsense mediated decay
G3V3C6 -TSL:5
ENST00000554604.5SHMT2-214879192aaENSP00000452163.1
 
Nonsense mediated decay
G3V540 -TSL:5
ENST00000557269.5SHMT2-22757652aaENSP00000450594.1
 
Nonsense mediated decay
G3V2D2 -TSL:5
ENST00000554600.5SHMT2-213837No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000554656.5SHMT2-215817No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000557740.5SHMT2-235569No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000553949.1SHMT2-209552No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000554467.5SHMT2-2123416No protein-
 
Retained intron
--TSL:2
ENST00000553868.1SHMT2-208941No protein-
 
Retained intron
--TSL:2
ENST00000555213.1SHMT2-218611No protein-
 
Retained intron
--TSL:3
ENST00000553950.5SHMT2-210584No protein-
 
Retained intron
--TSL:2
ENST00000553324.5SHMT2-204566No protein-
 
Retained intron
--TSL:4
ENST00000556798.1SHMT2-225525No protein-
 
Retained intron
--TSL:2
ENST00000557302.1SHMT2-228457No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,918 bps, Translation length: 494 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P34897

CCDS

This transcript is a member of the Human CCDS set: CCDS55837

Transcript Support Level (TSL)

TSL:1

Version

ENST00000557487.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.