Human (GRCh38.p14)
Description

tRNA splicing endonuclease subunit 54 [Source:HGNC Symbol;Acc:HGNC:27561]

Gene Synonyms

SEN54, SEN54L

Location
About this transcript

This transcript has 11 exons, is annotated with 15 domains and features, is associated with 4828 variant alleles and maps to 444 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000333213.11TSEN54-2011937526aaENSP00000327487.6
 
Protein coding
CCDS11724Q7Z6J9-1 NM_207346.3MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000680999.1TSEN54-2192093597aaENSP00000504984.1
 
Protein coding
A0A7P0Z413 -GENCODE basic
ENST00000545228.3TSEN54-2032063562aaENSP00000438169.3
 
Protein coding
J9JIH8 -GENCODE basicTSL:5
ENST00000434205.8TSEN54-2022010425aaENSP00000406559.4
 
Protein coding
E7EN92 -GENCODE basicTSL:5
ENST00000679928.1TSEN54-2173048192aaENSP00000506071.1
 
Nonsense mediated decay
A0A7P0Z4H0 --
ENST00000681282.1TSEN54-2202895260aaENSP00000506339.1
 
Nonsense mediated decay
A0A7P0Z4K6 --
ENST00000679782.1TSEN54-2152082500aaENSP00000505995.1
 
Nonsense mediated decay
A0A7P0TA59 --
ENST00000679429.1TSEN54-2131921177aaENSP00000505403.1
 
Nonsense mediated decay
Q7Z6J9-2 --
ENST00000583818.2TSEN54-211870177aaENSP00000461928.2
 
Nonsense mediated decay
J3KRC5 -TSL:5
ENST00000583173.5TSEN54-208798178aaENSP00000463619.1
 
Nonsense mediated decay
J3QLM6 -TSL:5
ENST00000679370.1TSEN54-2123414No protein-
 
Retained intron
---
ENST00000580013.6TSEN54-2073036No protein-
 
Retained intron
--TSL:4
ENST00000579449.2TSEN54-2062632No protein-
 
Retained intron
--TSL:2
ENST00000680528.1TSEN54-2182555No protein-
 
Retained intron
---
ENST00000679919.1TSEN54-2162138No protein-
 
Retained intron
---
ENST00000679443.1TSEN54-2141936No protein-
 
Retained intron
---
ENST00000577197.2TSEN54-2041100No protein-
 
Retained intron
--TSL:2
ENST00000578415.1TSEN54-205994No protein-
 
Retained intron
--TSL:3
ENST00000583454.1TSEN54-209733No protein-
 
Retained intron
--TSL:3
ENST00000583634.1TSEN54-210282No protein-
 
Retained intron
--TSL:2
Statistics

Exons: 11, Coding exons: 11, Transcript length: 1,937 bps, Translation length: 526 residues

MANE

This MANE Select transcript contains ENSP00000327487 and matches to NM_207346.3 and NP_997229.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7Z6J9

CCDS

This transcript is a member of the Human CCDS set: CCDS11724

Transcript Support Level (TSL)

TSL:1

Version

ENST00000333213.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.