Transcript: ENST00000623924.1 EPM2AIP1-202

Description

EPM2A interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:19735]

Gene Synonyms

FLJ11207, KIAA0766

Location

Chromosome 3: 36,986,810-36,992,940 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 1 domain and feature, is associated with 3007 variant alleles and maps to 15 oligo probes.

Gene

This transcript is a product of gene ENSG00000178567.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000322716.8	EPM2AIP1-201	8089	607aa	ENSP00000406027.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46790	Q7L775	NM_014805.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000623924.1	EPM2AIP1-202	543	42aa	ENSP00000485489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A096LPB0	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000624586.1	EPM2AIP1-203	513	139aa	ENSP00000485091.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A096LNL1	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 543 bps, Translation length: 42 residues

Transcript Support Level (TSL)

TSL:5

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000623924.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

454 RNA-Seq supported [Definitions]

Transcript: ENST00000623924.1 EPM2AIP1-202

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Transcript: ENST00000623924.1 EPM2AIP1-202

Summary

About Us

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