Human (GRCh38.p14)
Description

LIM zinc finger domain containing 1 [Source:HGNC Symbol;Acc:HGNC:6616]

Gene Synonyms

PINCH, PINCH1

About this transcript

This transcript has 10 exons, is annotated with 36 domains and features, is associated with 66693 variant alleles and maps to 991 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000544547.6LIMS1-2144354337aaENSP00000437912.1
 
Protein coding
CCDS54382P48059-2 NM_001193483.3MANE SelectEnsembl CanonicalGENCODE basicTSL:1
ENST00000393310.5LIMS1-2034392325aaENSP00000376987.1
 
Protein coding
CCDS2078P48059-1 -GENCODE basicTSL:1
ENST00000695520.1LIMS1-2194332261aaENSP00000511983.1
 
Protein coding
A0A8Q3WLN4 -GENCODE basic
ENST00000338045.7LIMS1-2021876387aaENSP00000337598.4
 
Protein coding
CCDS54385P48059-3 -GENCODE basicAPPRIS ALT1TSL:1
ENST00000695517.1LIMS1-2161635348aaENSP00000511980.1
 
Protein coding
CCDS92830A0A8Q3WKP0 -GENCODE basic
ENST00000409441.5LIMS1-2041627362aaENSP00000387264.1
 
Protein coding
CCDS54384P48059-5 -GENCODE basicAPPRIS P3TSL:1
ENST00000695521.1LIMS1-2201597325aaENSP00000511984.1
 
Protein coding
CCDS2078P48059-1 -GENCODE basic
ENST00000695519.1LIMS1-2181592332aaENSP00000511982.1
 
Protein coding
CCDS92831A0A8Q3WKJ2 -GENCODE basic
ENST00000410093.5LIMS1-2051526329aaENSP00000386926.1
 
Protein coding
CCDS54383P48059-4 -GENCODE basicTSL:1
ENST00000695516.1LIMS1-2151467346aaENSP00000511979.1
 
Protein coding
CCDS92829A0A8Q3WKI3 -GENCODE basic
ENST00000695522.1LIMS1-2211461398aaENSP00000511985.1
 
Protein coding
CCDS92833A0A8Q3WKK6 -GENCODE basic
ENST00000695518.1LIMS1-2171327325aaENSP00000511981.1
 
Protein coding
CCDS2078P48059-1 -GENCODE basic
ENST00000695523.1LIMS1-2221249270aaENSP00000511986.1
 
Protein coding
A0A8Q3WLX8 -GENCODE basic
ENST00000332345.10LIMS1-2011235325aaENSP00000331775.6
 
Protein coding
CCDS2078P48059-1 -GENCODE basicTSL:1
ENST00000434274.2LIMS1-20877955aaENSP00000410751.2
 
Protein coding
F8WB59 -TSL:3
ENST00000542845.3LIMS1-213727209aaENSP00000446121.2
 
Protein coding
A0A0M3HER1 -TSL:5CDS 5' incomplete
ENST00000414829.2LIMS1-206439117aaENSP00000399267.2
 
Protein coding
CCDS92832F8WC86 -GENCODE basicTSL:1
ENST00000422797.5LIMS1-2071544100aaENSP00000402322.1
 
Nonsense mediated decay
F8WE10 -TSL:1
ENST00000695524.1LIMS1-2231110No protein-
 
Protein coding CDS not defined
---
ENST00000462817.5LIMS1-210566No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000449684.6LIMS1-209492No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000474038.1LIMS1-211679No protein-
 
Retained intron
--TSL:1
ENST00000496653.4LIMS1-212626No protein-
 
Retained intron
--TSL:4
Statistics

Exons: 10, Coding exons: 10, Transcript length: 4,354 bps, Translation length: 337 residues

MANE

This MANE Select transcript contains ENSP00000437912 and matches to NM_001193483.3 and NP_001180412.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: P48059

CCDS

This transcript is a member of the Human CCDS set: CCDS54382

Transcript Support Level (TSL)

TSL:1

Version

ENST00000544547.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.