Human (GRCh38.p14)
Description

LIM zinc finger domain containing 1 [Source:HGNC Symbol;Acc:HGNC:6616]

Gene Synonyms

PINCH, PINCH1

About this transcript

This transcript has 3 exons, is annotated with 9 domains and features, is associated with 2267 variant alleles and maps to 242 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000544547.6LIMS1-2144354337aaENSP00000437912.1
 
Protein coding
CCDS54382P48059-2 NM_001193483.3MANE SelectEnsembl CanonicalGENCODE basicTSL:1
ENST00000393310.5LIMS1-2034392325aaENSP00000376987.1
 
Protein coding
CCDS2078P48059-1 -GENCODE basicTSL:1
ENST00000695520.1LIMS1-2194332261aaENSP00000511983.1
 
Protein coding
A0A8Q3WLN4 -GENCODE basic
ENST00000338045.7LIMS1-2021876387aaENSP00000337598.4
 
Protein coding
CCDS54385P48059-3 -GENCODE basicAPPRIS ALT1TSL:1
ENST00000695517.1LIMS1-2161635348aaENSP00000511980.1
 
Protein coding
CCDS92830A0A8Q3WKP0 -GENCODE basic
ENST00000409441.5LIMS1-2041627362aaENSP00000387264.1
 
Protein coding
CCDS54384P48059-5 -GENCODE basicAPPRIS P3TSL:1
ENST00000695521.1LIMS1-2201597325aaENSP00000511984.1
 
Protein coding
CCDS2078P48059-1 -GENCODE basic
ENST00000695519.1LIMS1-2181592332aaENSP00000511982.1
 
Protein coding
CCDS92831A0A8Q3WKJ2 -GENCODE basic
ENST00000410093.5LIMS1-2051526329aaENSP00000386926.1
 
Protein coding
CCDS54383P48059-4 -GENCODE basicTSL:1
ENST00000695516.1LIMS1-2151467346aaENSP00000511979.1
 
Protein coding
CCDS92829A0A8Q3WKI3 -GENCODE basic
ENST00000695522.1LIMS1-2211461398aaENSP00000511985.1
 
Protein coding
CCDS92833A0A8Q3WKK6 -GENCODE basic
ENST00000695518.1LIMS1-2171327325aaENSP00000511981.1
 
Protein coding
CCDS2078P48059-1 -GENCODE basic
ENST00000695523.1LIMS1-2221249270aaENSP00000511986.1
 
Protein coding
A0A8Q3WLX8 -GENCODE basic
ENST00000332345.10LIMS1-2011235325aaENSP00000331775.6
 
Protein coding
CCDS2078P48059-1 -GENCODE basicTSL:1
ENST00000434274.2LIMS1-20877955aaENSP00000410751.2
 
Protein coding
F8WB59 -TSL:3
ENST00000542845.3LIMS1-213727209aaENSP00000446121.2
 
Protein coding
A0A0M3HER1 -TSL:5CDS 5' incomplete
ENST00000414829.2LIMS1-206439117aaENSP00000399267.2
 
Protein coding
CCDS92832F8WC86 -GENCODE basicTSL:1
ENST00000422797.5LIMS1-2071544100aaENSP00000402322.1
 
Nonsense mediated decay
F8WE10 -TSL:1
ENST00000695524.1LIMS1-2231110No protein-
 
Protein coding CDS not defined
---
ENST00000462817.5LIMS1-210566No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000449684.6LIMS1-209492No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000474038.1LIMS1-211679No protein-
 
Retained intron
--TSL:1
ENST00000496653.4LIMS1-212626No protein-
 
Retained intron
--TSL:4
Statistics

Exons: 3, Coding exons: 2, Transcript length: 779 bps, Translation length: 55 residues

Transcript Support Level (TSL)

TSL:3

Version

ENST00000434274.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.