Transcript: ENST00000498047.1 DCLK3-202

Description

doublecortin like kinase 3 [Source:HGNC Symbol;Acc:HGNC:19005]

Gene Synonyms

DCAMKL3, DCDC3C, KIAA1765

Location

Chromosome 3: 36,718,093-36,729,795 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 5094 variant alleles and maps to 80 oligo probes.

Gene

This transcript is a product of gene ENSG00000163673.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000636136.2	DCLK3-203	5651	817aa	ENSP00000489900.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS93239	A0A1B0GTZ4	NM_001394672.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000416516.2	DCLK3-201	5344	648aa	ENSP00000394484.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43064	Q9C098	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000498047.1	DCLK3-202	280	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 280 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000498047.1

Type

Protein coding CDS not defined

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000498047.1 DCLK3-202

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Transcript: ENST00000498047.1 DCLK3-202

Summary

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