Human (GRCh38.p14)
Description

SMG1 nonsense mediated mRNA decay associated PI3K related kinase [Source:HGNC Symbol;Acc:HGNC:30045]

Gene Synonyms

ATX, KIAA0421, LIP

Location
About this transcript

This transcript has 11 exons, is annotated with 12 domains and features, is associated with 10961 variant alleles and maps to 1371 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000446231.7SMG1-201160623661aaENSP00000402515.3
 
Protein coding
CCDS45430Q96Q15-1 NM_015092.5MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000565324.5SMG1-210124653551aaENSP00000456259.1
 
Protein coding
J3KRA9 -TSL:1CDS 5' incomplete
ENST00000563235.5SMG1-2062910853aaENSP00000455861.2
 
Protein coding
H3BQN7 -TSL:2CDS 5' incomplete
ENST00000561947.5SMG1-2042664551aaENSP00000460854.1
 
Protein coding
I3L400 -TSL:5CDS 5' incomplete
ENST00000565224.5SMG1-2092372607aaENSP00000458380.1
 
Protein coding
I3L0W2 -GENCODE basicTSL:5
ENST00000532700.6SMG1-2021259335aaENSP00000432825.2
 
Protein coding
E9PNP6 -TSL:2CDS 3' incomplete
ENST00000563836.1SMG1-20856556aaENSP00000456025.1
 
Protein coding
H3BR09 -TSL:5CDS 3' incomplete
ENST00000569122.1SMG1-21556262aaENSP00000455453.2
 
Protein coding
H3BPS6 -TSL:5CDS 3' incomplete
ENST00000566328.2SMG1-21155085aaENSP00000484278.1
 
Protein coding
A0A087X1K8 -TSL:5CDS 5' incomplete
ENST00000568038.1SMG1-2131210321aaENSP00000458558.1
 
Nonsense mediated decay
I3L144 -TSL:2CDS 5' incomplete
ENST00000567737.1SMG1-212721No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000569764.1SMG1-2164187No protein-
 
Retained intron
--TSL:5
ENST00000568239.1SMG1-2142978No protein-
 
Retained intron
--TSL:1
ENST00000563448.1SMG1-2072016No protein-
 
Retained intron
--TSL:2
ENST00000561940.1SMG1-203964No protein-
 
Retained intron
--TSL:2
ENST00000562668.1SMG1-205449No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,664 bps, Translation length: 551 residues

Transcript Support Level (TSL)

TSL:5

Incomplete CDS

CDS 5' incomplete

Version

ENST00000561947.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.