Human (GRCh38.p14)
Description

methyl-CpG binding domain protein 1 [Source:HGNC Symbol;Acc:HGNC:6916]

Gene Synonyms

CXXC3, PCM1

Location
About this transcript

This transcript has 16 exons, is annotated with 24 domains and features, is associated with 6241 variant alleles and maps to 623 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000269468.10MBD1-2013009605aaENSP00000269468.5
 
Protein coding
CCDS11943Q9UIS9-1 NM_015846.4MANE SelectEnsembl CanonicalGENCODE basicTSL:5
ENST00000591416.5MBD1-2244905605aaENSP00000467017.1
 
Protein coding
CCDS11943Q9UIS9-1 -GENCODE basicTSL:5
ENST00000347968.7MBD1-2043091549aaENSP00000285102.5
 
Protein coding
CCDS11942Q9UIS9-7 -GENCODE basicTSL:1
ENST00000269471.9MBD1-2022980586aaENSP00000269471.5
 
Protein coding
CCDS32832Q9UIS9-2 -GENCODE basicAPPRIS ALT2TSL:5
ENST00000339998.10MBD1-2032956550aaENSP00000339546.5
 
Protein coding
CCDS56072Q9UIS9-6 -GENCODE basicTSL:1
ENST00000590208.5MBD1-2222913655aaENSP00000468785.1
 
Protein coding
CCDS59320Q9UIS9-12 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000353909.7MBD1-2052820556aaENSP00000269469.5
 
Protein coding
CCDS11944Q9UIS9-5 -GENCODE basicTSL:1
ENST00000705655.1MBD1-2282708680aaENSP00000516153.1
 
Protein coding
CCDS92462A0A994J7H0 -GENCODE basicAPPRIS ALT2
ENST00000585672.5MBD1-2122532567aaENSP00000466092.1
 
Protein coding
CCDS59318Q9UIS9-10 -GENCODE basicTSL:1
ENST00000457839.6MBD1-2102473630aaENSP00000405268.2
 
Protein coding
CCDS56073Q9UIS9-9 -GENCODE basicAPPRIS P4TSL:2
ENST00000382948.9MBD1-2062434605aaENSP00000372407.5
 
Protein coding
CCDS11943Q9UIS9-1 -GENCODE basicTSL:2
ENST00000585595.5MBD1-2112179630aaENSP00000468430.1
 
Protein coding
CCDS56073Q9UIS9-9 -GENCODE basicAPPRIS P4TSL:2
ENST00000398495.6MBD1-2092178566aaENSP00000381508.2
 
Protein coding
A0A0A0MS90 -GENCODE basicTSL:5
ENST00000592060.5MBD1-2271952416aaENSP00000467606.1
 
Protein coding
K7EPZ6 -TSL:1CDS 5' incomplete
ENST00000587605.5MBD1-2161945535aaENSP00000468042.1
 
Protein coding
CCDS59319Q9UIS9-11 -GENCODE basicTSL:2
ENST00000398493.5MBD1-2081845549aaENSP00000381506.1
 
Protein coding
CCDS11942Q9UIS9-7 -GENCODE basicTSL:5
ENST00000588937.5MBD1-2171761586aaENSP00000467763.1
 
Protein coding
CCDS32832Q9UIS9-2 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000591535.5MBD1-2251611536aaENSP00000465923.1
 
Protein coding
CCDS56071Q9UIS9-8 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000398488.5MBD1-2071512503aaENSP00000381502.1
 
Protein coding
CCDS11941Q9UIS9-4 -GENCODE basicTSL:1
ENST00000589541.5MBD1-218836240aaENSP00000466806.1
 
Protein coding
K7EN65 -TSL:3CDS 5' incomplete
ENST00000589733.1MBD1-219767256aaENSP00000466429.1
 
Protein coding
K7EMA9 -TSL:2CDS 5' and 3' incomplete
ENST00000590215.1MBD1-22374944aaENSP00000464823.1
 
Nonsense mediated decay
K7EIN3 -TSL:5
ENST00000586118.5MBD1-2131012No protein-
 
Retained intron
--TSL:3
ENST00000589867.2MBD1-221673No protein-
 
Retained intron
--TSL:3
ENST00000586679.1MBD1-214533No protein-
 
Retained intron
--TSL:3
ENST00000586884.1MBD1-215514No protein-
 
Retained intron
--TSL:3
ENST00000591661.1MBD1-226482No protein-
 
Retained intron
--TSL:3
ENST00000589758.1MBD1-220385No protein-
 
Retained intron
--TSL:1
Statistics

Exons: 16, Coding exons: 14, Transcript length: 2,820 bps, Translation length: 556 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UIS9

CCDS

This transcript is a member of the Human CCDS set: CCDS11944

Transcript Support Level (TSL)

TSL:1

Version

ENST00000353909.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.