Human (GRCh38.p14)
Description

SS18 subunit of BAF chromatin remodeling complex [Source:HGNC Symbol;Acc:HGNC:11340]

Gene Synonyms

SMARCL1, SSXT, SYT

Location
About this transcript

This transcript has 10 exons, is annotated with 12 domains and features, is associated with 31688 variant alleles and maps to 540 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000415083.7SS18-2033402418aaENSP00000414516.2
 
Protein coding
CCDS32807Q15532-1 NM_001007559.3MANE SelectEnsembl CanonicalGENCODE basicAPPRIS ALT1TSL:1
ENST00000542420.6SS18-2052321395aaENSP00000438066.2
 
Protein coding
CCDS77168B4DLD3 -GENCODE basicTSL:2
ENST00000269137.11SS18-2011836387aaENSP00000269137.7
 
Protein coding
CCDS54183Q15532-2 -GENCODE basicAPPRIS P4TSL:1
ENST00000584083.5SS18-224663130aaENSP00000463943.1
 
Protein coding
J3QQX5 -TSL:4CDS 3' incomplete
ENST00000579061.5SS18-212646152aaENSP00000462766.1
 
Protein coding
J3KT22 -TSL:3CDS 3' incomplete
ENST00000581021.5SS18-21858870aaENSP00000463586.1
 
Protein coding
J3QLJ7 -TSL:4CDS 3' incomplete
ENST00000579640.5SS18-213184058aaENSP00000462363.1
 
Nonsense mediated decay
J3KRP6 -TSL:2
ENST00000269138.9SS18-202154861aaENSP00000269138.5
 
Nonsense mediated decay
X6R3J2 -TSL:2
ENST00000585121.5SS18-225154584aaENSP00000462838.1
 
Nonsense mediated decay
J3KT74 -TSL:2
ENST00000539244.6SS18-20497741aaENSP00000441760.2
 
Nonsense mediated decay
F5GWN1 -TSL:1
ENST00000578954.5SS18-21175660aaENSP00000464664.1
 
Nonsense mediated decay
J3QS72 -TSL:3
ENST00000582448.5SS18-22158535aaENSP00000464609.1
 
Nonsense mediated decay
J3QSB3 -TSL:5
ENST00000577636.5SS18-20758055aaENSP00000463933.1
 
Nonsense mediated decay
J3QQW6 -TSL:3
ENST00000578700.5SS18-21057545aaENSP00000464673.1
 
Nonsense mediated decay
J3QSG1 -TSL:5
ENST00000581570.5SS18-21957160aaENSP00000464556.1
 
Nonsense mediated decay
J3QS72 -TSL:5
ENST00000580751.5SS18-21654760aaENSP00000464049.1
 
Nonsense mediated decay
J3QS72 -TSL:4
ENST00000580642.2SS18-21554558aaENSP00000462104.1
 
Nonsense mediated decay
J3KRP6 -TSL:4
ENST00000582792.5SS18-22253194aaENSP00000463928.1
 
Nonsense mediated decay
J3QQW2 -TSL:5
ENST00000577572.5SS18-20651068aaENSP00000463802.1
 
Nonsense mediated decay
J3QQM2 -TSL:4
ENST00000585241.5SS18-226774No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000577751.5SS18-208580No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000578595.1SS18-209406No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000583595.1SS18-223375No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000582092.1SS18-220215No protein-
 
Protein coding CDS not defined
--TSL:1
ENST00000580958.5SS18-217775No protein-
 
Retained intron
--TSL:2
ENST00000580003.1SS18-214609No protein-
 
Retained intron
--TSL:2
Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,836 bps, Translation length: 387 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15532

CCDS

This transcript is a member of the Human CCDS set: CCDS54183

Transcript Support Level (TSL)

TSL:1

Version

ENST00000269137.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.